Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 TTN-AS1-268ENST00000629094 604 ntTSL 5 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
HDDC3Q8N4P3 RPL31P11-201ENST00000426558 1558 ntBASIC6.52□□□□□ -1.36
HDDC3Q8N4P3 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.36
HDDC3Q8N4P3 NEK2P4-201ENST00000425793 1329 ntBASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AL512310.3-201ENST00000547023 1335 ntBASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AL669831.5-218ENST00000591702 1873 ntBASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AL359195.2-201ENST00000623657 4412 ntBASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 RN7SKP206-201ENST00000410823 293 ntBASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 MTND2P12-201ENST00000417560 1252 ntBASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 HNRNPDLP2-201ENST00000455248 751 ntBASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AC084211.1-201ENST00000473893 328 ntTSL 2 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 RPL23AP68-201ENST00000480924 445 ntBASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AC008521.2-201ENST00000591021 259 ntBASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AP001264.1-201ENST00000620602 703 ntBASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 CACNA2D3-210ENST00000490478 3557 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 PKN2-202ENST00000370513 2890 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AC073342.2-201ENST00000595842 1800 ntBASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 NPL-212ENST00000614468 2376 ntTSL 5 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AC007485.2-201ENST00000623493 1667 ntBASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 MAPK10-323ENST00000641493 3207 ntBASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
HDDC3Q8N4P3 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 CASC19-246ENST00000641625 1606 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 COX6B1P3-201ENST00000312310 260 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 HMGN1P20-201ENST00000411849 300 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC017078.1-201ENST00000416146 368 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 RPL21P50-201ENST00000417698 477 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC002127.1-201ENST00000421305 225 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC026254.2-201ENST00000475295 371 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC063943.2-201ENST00000495697 534 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC022206.1-201ENST00000495947 347 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC106872.4-201ENST00000510050 523 ntBASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 INTS9-AS1-201ENST00000520055 548 ntTSL 5 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 LECT2-205ENST00000522943 574 ntTSL 3 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6.51□□□□□ -1.37
HDDC3Q8N4P3 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms