Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC8.23□□□□□ -1.09
HOXC9P31274 GAS5-202ENST00000414075 413 ntTSL 2 BASIC8.23□□□□□ -1.09
HOXC9P31274 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC8.23□□□□□ -1.09
HOXC9P31274 AP006222.1-205ENST00000450734 457 ntBASIC8.23□□□□□ -1.09
HOXC9P31274 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC8.23□□□□□ -1.09
HOXC9P31274 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC8.23□□□□□ -1.09
HOXC9P31274 SCARNA21.2-201ENST00000516600 166 ntBASIC8.23□□□□□ -1.09
HOXC9P31274 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC8.23□□□□□ -1.09
HOXC9P31274 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC8.23□□□□□ -1.09
HOXC9P31274 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC8.23□□□□□ -1.09
HOXC9P31274 MIR6768-201ENST00000610734 72 ntBASIC8.23□□□□□ -1.09
HOXC9P31274 AC024255.1-201ENST00000614376 102 ntBASIC8.23□□□□□ -1.09
HOXC9P31274 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
HOXC9P31274 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
HOXC9P31274 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
HOXC9P31274 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC8.23□□□□□ -1.09
HOXC9P31274 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
HOXC9P31274 NACA-203ENST00000454682 6629 ntTSL 5 BASIC8.23□□□□□ -1.09
HOXC9P31274 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC8.22□□□□□ -1.09
HOXC9P31274 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC8.22□□□□□ -1.09
HOXC9P31274 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC8.22□□□□□ -1.09
HOXC9P31274 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC8.22□□□□□ -1.09
HOXC9P31274 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
HOXC9P31274 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
HOXC9P31274 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC8.22□□□□□ -1.09
HOXC9P31274 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
HOXC9P31274 RNA5SP478-201ENST00000364657 115 ntBASIC8.22□□□□□ -1.09
HOXC9P31274 CRP-204ENST00000368112 787 ntTSL 2 BASIC8.22□□□□□ -1.09
HOXC9P31274 RPL35AP3-201ENST00000414680 288 ntBASIC8.22□□□□□ -1.09
HOXC9P31274 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC8.22□□□□□ -1.09
HOXC9P31274 AL512593.1-201ENST00000444758 779 ntBASIC8.22□□□□□ -1.09
HOXC9P31274 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
HOXC9P31274 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC8.22□□□□□ -1.09
HOXC9P31274 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC8.22□□□□□ -1.09
HOXC9P31274 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC8.22□□□□□ -1.09
HOXC9P31274 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC8.22□□□□□ -1.09
HOXC9P31274 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC8.22□□□□□ -1.09
HOXC9P31274 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC8.22□□□□□ -1.09
HOXC9P31274 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC8.22□□□□□ -1.09
HOXC9P31274 AL445649.1-201ENST00000615941 691 ntBASIC8.22□□□□□ -1.09
HOXC9P31274 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
HOXC9P31274 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
HOXC9P31274 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC8.22□□□□□ -1.09
HOXC9P31274 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
HOXC9P31274 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC8.22□□□□□ -1.09
HOXC9P31274 AC013488.1-201ENST00000526618 1838 ntBASIC8.22□□□□□ -1.09
HOXC9P31274 FO082842.1-201ENST00000423552 1370 ntBASIC8.22□□□□□ -1.09
HOXC9P31274 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC8.21□□□□□ -1.09
HOXC9P31274 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC8.21□□□□□ -1.09
HOXC9P31274 AP002364.1-201ENST00000623330 3386 ntBASIC8.21□□□□□ -1.09
HOXC9P31274 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.09
HOXC9P31274 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC8.21□□□□□ -1.09
HOXC9P31274 AC015689.2-201ENST00000528172 1738 ntBASIC8.21□□□□□ -1.09
HOXC9P31274 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC8.21□□□□□ -1.09
HOXC9P31274 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
HOXC9P31274 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC8.21□□□□□ -1.1
HOXC9P31274 BIN2P1-201ENST00000504996 1530 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.1
HOXC9P31274 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
HOXC9P31274 RNA5SP242-201ENST00000364171 118 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 AL096829.1-201ENST00000413677 457 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC8.21□□□□□ -1.1
HOXC9P31274 UBE2V1P14-201ENST00000415815 558 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 RPS7P8-201ENST00000418311 581 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
HOXC9P31274 AL035660.1-201ENST00000422041 222 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 AL512637.1-201ENST00000439523 1231 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC8.21□□□□□ -1.1
HOXC9P31274 HMGN1P36-201ENST00000446623 298 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 AL445466.1-201ENST00000448432 357 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC8.21□□□□□ -1.1
HOXC9P31274 RN7SL269P-201ENST00000467795 305 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC8.21□□□□□ -1.1
HOXC9P31274 AP000648.1-201ENST00000529682 397 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC8.21□□□□□ -1.1
HOXC9P31274 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC8.21□□□□□ -1.1
HOXC9P31274 AL031601.1-201ENST00000605702 394 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 FBXW7-203ENST00000296555 3572 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
HOXC9P31274 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC8.21□□□□□ -1.1
HOXC9P31274 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC8.21□□□□□ -1.1
HOXC9P31274 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
HOXC9P31274 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
HOXC9P31274 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
HOXC9P31274 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
HOXC9P31274 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC8.21□□□□□ -1.1
HOXC9P31274 CDY3P-201ENST00000454543 1618 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
HOXC9P31274 EEF1A1P24-201ENST00000451469 1378 ntBASIC8.21□□□□□ -1.1
HOXC9P31274 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
HOXC9P31274 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC8.21□□□□□ -1.1
HOXC9P31274 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 AC110373.1-201ENST00000505994 3505 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC8.2□□□□□ -1.1
HOXC9P31274 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
HOXC9P31274 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 AL157831.2-201ENST00000564681 3095 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 AC024587.1-201ENST00000505925 2157 ntBASIC8.2□□□□□ -1.1
HOXC9P31274 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HOXC9P31274 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC8.2□□□□□ -1.1
HOXC9P31274 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms