Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 YWHAQP7-201ENST00000603536 658 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AL356052.1-201ENST00000605764 376 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AC010542.5-201ENST00000612427 382 ntBASIC7.54□□□□□ -1.2
MSX1P28360 MIAT_exon5_1.1-201ENST00000618919 149 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AL158209.2-201ENST00000619266 216 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AP003122.6-201ENST00000623831 495 ntBASIC7.54□□□□□ -1.2
MSX1P28360 AP000356.4-201ENST00000639500 172 ntBASIC7.54□□□□□ -1.2
MSX1P28360 GRHL1-201ENST00000324907 3563 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 LINC01588-202ENST00000528300 3208 ntTSL 2 BASIC7.54□□□□□ -1.2
MSX1P28360 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC7.54□□□□□ -1.2
MSX1P28360 LNX1-201ENST00000263925 2953 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 PYHIN1-204ENST00000392252 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 ZNF234-201ENST00000426739 4551 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 EPB41-202ENST00000347529 2676 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 CLSTN2-AS1-201ENST00000513309 2693 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 ZNF569-202ENST00000392149 3689 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 LINC00672-201ENST00000583195 3692 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
MSX1P28360 AC006269.1-201ENST00000636752 2789 ntAPPRIS P1 TSL 5 BASIC7.54□□□□□ -1.2
MSX1P28360 AC009948.3-201ENST00000603415 1798 ntBASIC7.54□□□□□ -1.2
MSX1P28360 RC3H1-203ENST00000367696 11261 ntAPPRIS P3 TSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 ST7-213ENST00000432298 1956 ntTSL 2 BASIC7.53□□□□□ -1.2
MSX1P28360 CYP19A1-216ENST00000559878 1958 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 ZNF701-201ENST00000301093 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC7.53□□□□□ -1.2
MSX1P28360 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 PLEKHA5-215ENST00000539256 3357 ntTSL 2 BASIC7.53□□□□□ -1.2
MSX1P28360 CU633906.2-201ENST00000624576 2257 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 AL136140.2-201ENST00000624717 1705 ntBASIC7.53□□□□□ -1.2
MSX1P28360 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 AQP4-AS1-201ENST00000568797 3119 ntTSL 2 BASIC7.53□□□□□ -1.2
MSX1P28360 EZH1-201ENST00000415827 4608 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 MEF2A-205ENST00000557942 5413 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC7.53□□□□□ -1.2
MSX1P28360 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
MSX1P28360 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
MSX1P28360 SNORA4.1-201ENST00000364263 144 ntBASIC7.53□□□□□ -1.2
MSX1P28360 GPN2-201ENST00000374133 715 ntTSL 3 BASIC7.53□□□□□ -1.2
MSX1P28360 PHACTR1-204ENST00000379348 795 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 GZMB-203ENST00000382542 666 ntTSL 2 BASIC7.53□□□□□ -1.2
MSX1P28360 IGKV3D-11-201ENST00000390277 444 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
MSX1P28360 CFAP70-204ENST00000394865 1222 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 GLRX3P2-201ENST00000405027 1038 ntBASIC7.53□□□□□ -1.2
MSX1P28360 TRIB2-203ENST00000405331 830 ntTSL 2 BASIC7.53□□□□□ -1.2
MSX1P28360 MIR1302-11-201ENST00000408051 138 ntBASIC7.53□□□□□ -1.2
MSX1P28360 MIR1302-9-201ENST00000408365 138 ntBASIC7.53□□□□□ -1.2
MSX1P28360 MIR1302-10-201ENST00000408734 138 ntBASIC7.53□□□□□ -1.2
MSX1P28360 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC7.53□□□□□ -1.2
MSX1P28360 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC7.53□□□□□ -1.2
MSX1P28360 NANOGP4-201ENST00000427230 913 ntBASIC7.53□□□□□ -1.2
MSX1P28360 AC099066.1-201ENST00000428148 534 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 RPL12P4-201ENST00000432629 497 ntBASIC7.53□□□□□ -1.2
MSX1P28360 GHRL-207ENST00000437422 443 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
MSX1P28360 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC7.53□□□□□ -1.2
MSX1P28360 AC002542.1-201ENST00000440683 193 ntBASIC7.53□□□□□ -1.2
MSX1P28360 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 AC093019.1-201ENST00000443135 252 ntBASIC7.53□□□□□ -1.2
MSX1P28360 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC7.53□□□□□ -1.2
MSX1P28360 AL035407.2-201ENST00000454090 378 ntBASIC7.53□□□□□ -1.2
MSX1P28360 OR13C1P-201ENST00000457612 963 ntBASIC7.53□□□□□ -1.2
MSX1P28360 XACT-201ENST00000468762 497 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC7.53□□□□□ -1.2
MSX1P28360 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
MSX1P28360 RPL12P32-201ENST00000484010 494 ntBASIC7.53□□□□□ -1.2
MSX1P28360 RNF138P1-201ENST00000502765 546 ntBASIC7.53□□□□□ -1.2
MSX1P28360 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC7.53□□□□□ -1.2
MSX1P28360 AC079921.2-201ENST00000507579 455 ntTSL 3 BASIC7.53□□□□□ -1.2
MSX1P28360 AC091133.4-201ENST00000511142 308 ntBASIC7.53□□□□□ -1.2
MSX1P28360 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 KCTD9P4-201ENST00000526766 1166 ntBASIC7.53□□□□□ -1.2
MSX1P28360 SSR2-215ENST00000529008 849 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC7.53□□□□□ -1.2
MSX1P28360 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 AC140118.1-201ENST00000539209 532 ntTSL 4 BASIC7.53□□□□□ -1.2
MSX1P28360 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC7.53□□□□□ -1.2
MSX1P28360 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC7.53□□□□□ -1.2
MSX1P28360 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 AC048383.1-201ENST00000558226 527 ntTSL 4 BASIC7.53□□□□□ -1.2
MSX1P28360 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC7.53□□□□□ -1.2
MSX1P28360 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC7.53□□□□□ -1.2
MSX1P28360 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC7.53□□□□□ -1.2
MSX1P28360 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 SKA2-203ENST00000578105 689 ntTSL 2 BASIC7.53□□□□□ -1.2
MSX1P28360 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC7.53□□□□□ -1.2
MSX1P28360 AC063977.5-201ENST00000601044 974 ntBASIC7.53□□□□□ -1.2
MSX1P28360 DUXAP4-201ENST00000603046 613 ntBASIC7.53□□□□□ -1.2
MSX1P28360 MIR1302-2-201ENST00000607096 138 ntBASIC7.53□□□□□ -1.2
MSX1P28360 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC7.53□□□□□ -1.2
MSX1P28360 AP000238.1-201ENST00000608759 426 ntBASIC7.53□□□□□ -1.2
MSX1P28360 Y_RNA.812-201ENST00000610788 101 ntBASIC7.53□□□□□ -1.2
MSX1P28360 MIR6726-201ENST00000613751 61 ntBASIC7.53□□□□□ -1.2
MSX1P28360 Y_RNA.784-201ENST00000613803 101 ntBASIC7.53□□□□□ -1.2
MSX1P28360 AC116165.3-201ENST00000614524 400 ntBASIC7.53□□□□□ -1.2
MSX1P28360 MESTIT1_2.1-201ENST00000616328 235 ntBASIC7.53□□□□□ -1.2
MSX1P28360 Y_RNA.787-201ENST00000616522 101 ntBASIC7.53□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms