Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL5A3P25940 TMTC1-201ENST00000256062 8805 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL5A3P25940 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL5A3P25940 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL5A3P25940 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC7.63□□□□□ -1.19
COL5A3P25940 ATP2B4-203ENST00000357681 8968 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL5A3P25940 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL5A3P25940 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL5A3P25940 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
COL5A3P25940 RN7SKP59-201ENST00000410520 314 ntBASIC7.63□□□□□ -1.19
COL5A3P25940 AC097721.1-201ENST00000427150 1253 ntBASIC7.63□□□□□ -1.19
COL5A3P25940 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC7.63□□□□□ -1.19
COL5A3P25940 AC108693.1-201ENST00000496068 432 ntBASIC7.63□□□□□ -1.19
COL5A3P25940 RN7SL466P-201ENST00000497546 295 ntBASIC7.63□□□□□ -1.19
COL5A3P25940 AC074087.1-201ENST00000512059 724 ntBASIC7.63□□□□□ -1.19
COL5A3P25940 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC7.63□□□□□ -1.19
COL5A3P25940 GMFG-212ENST00000602185 423 ntTSL 3 BASIC7.63□□□□□ -1.19
COL5A3P25940 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC7.63□□□□□ -1.19
COL5A3P25940 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC7.63□□□□□ -1.19
COL5A3P25940 AL445649.1-201ENST00000615941 691 ntBASIC7.63□□□□□ -1.19
COL5A3P25940 AL035661.1-201ENST00000620459 1144 ntBASIC7.63□□□□□ -1.19
COL5A3P25940 AC022726.2-201ENST00000634673 547 ntBASIC7.63□□□□□ -1.19
COL5A3P25940 AC003992.1-201ENST00000635364 557 ntBASIC7.63□□□□□ -1.19
COL5A3P25940 IPO11-201ENST00000325324 4356 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL5A3P25940 ITSN2-202ENST00000361999 5814 ntAPPRIS ALT2 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL5A3P25940 DGKB-206ENST00000407950 3651 ntTSL 5 BASIC7.63□□□□□ -1.19
COL5A3P25940 PDCD6IP-201ENST00000307296 6161 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL5A3P25940 AGXT2-206ENST00000618015 2181 ntTSL 5 BASIC7.63□□□□□ -1.19
COL5A3P25940 GRIP1-201ENST00000359742 5216 ntTSL 5 BASIC7.63□□□□□ -1.19
COL5A3P25940 DDI2-202ENST00000480945 10625 ntAPPRIS P1 TSL 2 BASIC7.62□□□□□ -1.19
COL5A3P25940 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC7.62□□□□□ -1.19
COL5A3P25940 MEP1B-204ENST00000581447 2308 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC7.62□□□□□ -1.19
COL5A3P25940 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC7.62□□□□□ -1.19
COL5A3P25940 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 ROBO2-201ENST00000332191 5437 ntAPPRIS ALT2 TSL 5 BASIC7.62□□□□□ -1.19
COL5A3P25940 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC7.62□□□□□ -1.19
COL5A3P25940 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 EBF1-203ENST00000517373 2277 ntTSL 5 BASIC7.62□□□□□ -1.19
COL5A3P25940 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 RN7SKP128-201ENST00000364270 303 ntBASIC7.62□□□□□ -1.19
COL5A3P25940 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC7.62□□□□□ -1.19
COL5A3P25940 NPM1P22-201ENST00000427761 952 ntBASIC7.62□□□□□ -1.19
COL5A3P25940 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC7.62□□□□□ -1.19
COL5A3P25940 YWHABP1-201ENST00000445359 727 ntBASIC7.62□□□□□ -1.19
COL5A3P25940 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC7.62□□□□□ -1.19
COL5A3P25940 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC7.62□□□□□ -1.19
COL5A3P25940 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC7.62□□□□□ -1.19
COL5A3P25940 RNU6-615P-201ENST00000516065 106 ntBASIC7.62□□□□□ -1.19
COL5A3P25940 IGHV1-14-201ENST00000523391 241 ntBASIC7.62□□□□□ -1.19
COL5A3P25940 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC7.62□□□□□ -1.19
COL5A3P25940 IGLV3-30-201ENST00000524362 298 ntBASIC7.62□□□□□ -1.19
COL5A3P25940 OR4H6P-201ENST00000563771 921 ntBASIC7.62□□□□□ -1.19
COL5A3P25940 AC119403.2-201ENST00000590960 598 ntBASIC7.62□□□□□ -1.19
COL5A3P25940 AC211433.2-201ENST00000608433 387 ntBASIC7.62□□□□□ -1.19
COL5A3P25940 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC7.62□□□□□ -1.19
COL5A3P25940 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC7.62□□□□□ -1.19
COL5A3P25940 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 AC053481.2-202ENST00000582394 1500 ntBASIC7.62□□□□□ -1.19
COL5A3P25940 AC113615.1-201ENST00000507424 4121 ntTSL 2 BASIC7.62□□□□□ -1.19
COL5A3P25940 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 FBXL21-201ENST00000297158 1305 ntBASIC7.62□□□□□ -1.19
COL5A3P25940 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL5A3P25940 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC7.61□□□□□ -1.19
COL5A3P25940 AC092821.3-202ENST00000641304 2767 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC7.61□□□□□ -1.19
COL5A3P25940 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC7.61□□□□□ -1.19
COL5A3P25940 PCDH15-210ENST00000395438 5806 ntAPPRIS ALT2 TSL 5 BASIC7.61□□□□□ -1.19
COL5A3P25940 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL5A3P25940 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC7.61□□□□□ -1.19
COL5A3P25940 RNA5SP183-201ENST00000362452 119 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 RN7SKP166-201ENST00000410812 305 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC7.61□□□□□ -1.19
COL5A3P25940 OR6E1P-201ENST00000414424 923 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC7.61□□□□□ -1.19
COL5A3P25940 AL662874.1-201ENST00000426065 230 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 CYCSP51-201ENST00000443545 318 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC7.61□□□□□ -1.19
COL5A3P25940 RN7SL222P-201ENST00000476452 299 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 RPL32P9-201ENST00000487963 407 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL5A3P25940 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC7.61□□□□□ -1.19
COL5A3P25940 AC087269.2-201ENST00000641764 975 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC7.61□□□□□ -1.19
COL5A3P25940 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL5A3P25940 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC7.61□□□□□ -1.19
COL5A3P25940 AC110597.1-201ENST00000562669 3176 ntBASIC7.61□□□□□ -1.19
COL5A3P25940 SYNPO2-203ENST00000434046 3588 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
COL5A3P25940 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC7.61□□□□□ -1.19
COL5A3P25940 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL5A3P25940 MEGF10-201ENST00000274473 7594 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL5A3P25940 ZNF175-201ENST00000262259 6535 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
COL5A3P25940 AP002370.1-201ENST00000528055 1602 ntBASIC7.61□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms