Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MAPK14-203ENST00000310795 1066 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 CNTRL-202ENST00000373844 713 ntTSL 3 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 RNY3P9-201ENST00000384727 106 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC006511.2-201ENST00000388966 660 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 RNU6-796P-201ENST00000391086 107 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 RNU1-56P-201ENST00000391303 164 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AL391422.1-201ENST00000402155 436 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 SUMO2P13-201ENST00000403109 272 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AL139100.1-201ENST00000408001 498 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 RNA5SP280-201ENST00000411230 115 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 UBE2V1P11-201ENST00000411559 285 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 RPL17P17-201ENST00000419491 557 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 DEFB130D-201ENST00000426866 237 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC092646.1-201ENST00000427142 901 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 MTCO2P20-201ENST00000437339 673 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 SDHCP3-201ENST00000445371 506 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 OR7E7P-201ENST00000455678 1012 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 EIF3LP2-201ENST00000457262 807 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 RPS16P9-201ENST00000477220 427 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 RPL10P7-201ENST00000495649 625 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC093895.1-201ENST00000506480 821 ntTSL 3 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC091163.3-201ENST00000518269 1144 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AP001636.2-201ENST00000525517 696 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 NQO1-205ENST00000561500 891 ntTSL 3 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC096708.2-201ENST00000577676 512 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 RN7SL131P-201ENST00000579043 256 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC110603.1-201ENST00000580645 468 ntTSL 3 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC005412.1-201ENST00000580812 1049 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 ZNF415-218ENST00000599261 601 ntTSL 3 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AL050403.2-202ENST00000603462 492 ntTSL 5 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC018690.1-201ENST00000608144 626 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC245407.2-201ENST00000614199 451 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC120349.3-201ENST00000624377 529 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 LINC00466-206ENST00000634576 1279 ntTSL 5 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AC116631.1-202ENST00000640984 683 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AL596275.2-203ENST00000641951 371 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 ZNF761-202ENST00000432094 4061 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 UG0898H09-202ENST00000623646 7040 ntBASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 OR2L13-203ENST00000641893 1817 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC6.99□□□□□ -1.29
TRIM39Q9HCM9 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AL022068.1-201ENST00000636202 1875 ntTSL 5 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AC079298.1-201ENST00000625026 1619 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 FO082842.1-201ENST00000423552 1370 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AC092646.2-201ENST00000431242 2095 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 CTXN3-201ENST00000379445 1660 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 RNU6-252P-201ENST00000363232 107 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 FPGT-TNNI3K-201ENST00000370893 1195 ntTSL 2 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 OR13C3-201ENST00000374781 1108 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 ZNF37CP-201ENST00000406795 241 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AC244452.1-201ENST00000413798 141 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 MEG8-201ENST00000414488 800 ntTSL 3 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 GAPDHP69-201ENST00000425504 1008 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 CHCHD3P1-201ENST00000425516 676 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AGKP1-201ENST00000455254 1263 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 MED28P7-201ENST00000456611 530 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 MRPS22-205ENST00000478464 1065 ntTSL 5 BASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 RPL23AP8-201ENST00000479812 475 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AC010374.1-201ENST00000503762 1237 ntBASIC6.98□□□□□ -1.29
TRIM39Q9HCM9 AC109588.1-201ENST00000507759 726 ntTSL 3 BASIC6.98□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms