Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 UNC5D-201ENST00000287272 8662 ntTSL 5 BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 MELK-211ENST00000545008 2236 ntTSL 2 BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 BX322650.1-201ENST00000332359 2143 ntBASIC9.41□□□□□ -0.9
SCAPERQ9BY12 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
SCAPERQ9BY12 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 NPM1P22-201ENST00000427761 952 ntBASIC9.4□□□□□ -0.9
SCAPERQ9BY12 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 TRIM60P16-201ENST00000444048 694 ntBASIC9.4□□□□□ -0.9
SCAPERQ9BY12 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 AC109454.2-201ENST00000503470 520 ntTSL 5 BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 AC106800.3-201ENST00000511389 308 ntBASIC9.4□□□□□ -0.9
SCAPERQ9BY12 RNA5SP34-201ENST00000516887 130 ntBASIC9.4□□□□□ -0.9
SCAPERQ9BY12 AL034408.1-201ENST00000637712 664 ntBASIC9.4□□□□□ -0.9
SCAPERQ9BY12 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 AL359976.1-201ENST00000418655 3528 ntBASIC9.4□□□□□ -0.9
SCAPERQ9BY12 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 NEPNP-201ENST00000404786 1371 ntBASIC9.4□□□□□ -0.9
SCAPERQ9BY12 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.9
SCAPERQ9BY12 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
SCAPERQ9BY12 CUBNP3-201ENST00000457461 1784 ntBASIC9.4□□□□□ -0.91
SCAPERQ9BY12 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC9.4□□□□□ -0.91
SCAPERQ9BY12 AC005839.1-201ENST00000624148 3213 ntBASIC9.4□□□□□ -0.91
SCAPERQ9BY12 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 MIR375-201ENST00000362103 64 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 RPL35AP3-201ENST00000414680 288 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 RPS7P8-201ENST00000418311 581 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 AC245884.2-201ENST00000426257 404 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 AL512593.1-201ENST00000444758 779 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 AL445466.1-201ENST00000448432 357 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 AL122020.1-201ENST00000472287 459 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 RPL32P9-201ENST00000487963 407 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 MIR4776-2-201ENST00000580204 80 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 AC027088.4-201ENST00000611559 1947 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 Z82209.2-201ENST00000623410 2012 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 LINC01931-201ENST00000295052 1832 ntTSL 2 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 MEP1B-204ENST00000581447 2308 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 GAS5-202ENST00000414075 413 ntTSL 2 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 ZNF619P1-201ENST00000446539 752 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 LINC02424-201ENST00000548512 1264 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 AL136295.6-201ENST00000610486 658 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 AC006924.1-201ENST00000610750 559 ntBASIC9.39□□□□□ -0.91
SCAPERQ9BY12 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC9.39□□□□□ -0.91
SCAPERQ9BY12 AC119674.1-204ENST00000641348 1343 ntBASIC9.38□□□□□ -0.91
SCAPERQ9BY12 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
SCAPERQ9BY12 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC9.38□□□□□ -0.91
SCAPERQ9BY12 MROH9-201ENST00000367758 2227 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
SCAPERQ9BY12 MAPK10-261ENST00000641050 3109 ntBASIC9.38□□□□□ -0.91
SCAPERQ9BY12 C11orf63-203ENST00000531316 2782 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.91
SCAPERQ9BY12 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
SCAPERQ9BY12 RMST-210ENST00000640149 2844 ntTSL 5 BASIC9.38□□□□□ -0.91
SCAPERQ9BY12 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
SCAPERQ9BY12 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
SCAPERQ9BY12 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms