Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 TCEANC-205ENST00000544987 1146 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 GUCY1B2-204ENST00000531898 1979 ntBASIC5.9□□□□□ -1.46
VPS13AQ96RL7 DPCR1-201ENST00000304311 2658 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 ZNF286A-221ENST00000593105 5222 ntTSL 3 BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 DIAPH2-201ENST00000324765 9333 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 RPS2P45-201ENST00000469997 2057 ntBASIC5.9□□□□□ -1.46
VPS13AQ96RL7 DPCR1-203ENST00000636043 5587 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
VPS13AQ96RL7 PIGN-251ENST00000640876 6045 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 RNA5SP131-201ENST00000365452 119 ntBASIC5.9□□□□□ -1.47
VPS13AQ96RL7 RNA5SP87-201ENST00000384155 118 ntBASIC5.9□□□□□ -1.47
VPS13AQ96RL7 AL050335.1-201ENST00000396909 869 ntBASIC5.9□□□□□ -1.47
VPS13AQ96RL7 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 RPS11P7-201ENST00000442125 465 ntBASIC5.9□□□□□ -1.47
VPS13AQ96RL7 RN7SL591P-201ENST00000496150 292 ntBASIC5.9□□□□□ -1.47
VPS13AQ96RL7 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 AC115837.1-201ENST00000517662 1001 ntBASIC5.9□□□□□ -1.47
VPS13AQ96RL7 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 MIR4480-201ENST00000582492 71 ntBASIC5.9□□□□□ -1.47
VPS13AQ96RL7 AC183089.2-201ENST00000637931 916 ntBASIC5.9□□□□□ -1.47
VPS13AQ96RL7 MAPK10-350ENST00000641777 965 ntBASIC5.9□□□□□ -1.47
VPS13AQ96RL7 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 TFRC-203ENST00000420415 4814 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 VCL-201ENST00000211998 5490 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 AL355375.1-201ENST00000405686 392 ntBASIC5.9□□□□□ -1.47
VPS13AQ96RL7 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 AURKAPS1-201ENST00000451805 1212 ntBASIC5.9□□□□□ -1.47
VPS13AQ96RL7 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 IGKV1D-22-201ENST00000518953 324 ntBASIC5.9□□□□□ -1.47
VPS13AQ96RL7 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.9□□□□□ -1.47
VPS13AQ96RL7 AL645933.2-201ENST00000606743 1207 ntBASIC5.9□□□□□ -1.47
VPS13AQ96RL7 CLCN4-202ENST00000380833 6750 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AC062022.1-201ENST00000451026 1684 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 ZNF442-201ENST00000242804 6219 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 ATXN1-202ENST00000436367 10587 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 RPS7P3-201ENST00000443360 580 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 GAPDHP23-201ENST00000444823 993 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AL389915.2-201ENST00000454576 441 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 PGAM1P13-201ENST00000507497 754 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AC209154.1-201ENST00000582156 337 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AL133230.1-201ENST00000431019 4587 ntTSL 2 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 LINC00654-201ENST00000379053 6113 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 DIP2C-202ENST00000381496 7749 ntTSL 5 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AC061975.7-201ENST00000592016 2692 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 FAM13A-202ENST00000395002 4945 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 ING3-204ENST00000431467 1447 ntTSL 2 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 ZNF778-207ENST00000620195 11031 ntAPPRIS P3 TSL 2 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AL139805.2-201ENST00000455305 2433 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 SLC26A9-201ENST00000340781 4510 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 LPIN2-201ENST00000261596 6229 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 ZBTB40-204ENST00000404138 8992 ntAPPRIS P3 TSL 5 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 GAPDHP24-201ENST00000328713 983 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 RBBP4P4-201ENST00000398588 1289 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 OR5W1P-201ENST00000423705 938 ntBASIC5.89□□□□□ -1.47
VPS13AQ96RL7 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC5.89□□□□□ -1.47
VPS13AQ96RL7 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms