Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CDH13-201ENST00000268613 2722 ntAPPRIS P4 TSL 2 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 AP003119.3-201ENST00000566747 4192 ntBASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 MARK2P4-201ENST00000503381 2380 ntBASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 MELK-211ENST00000545008 2236 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 AC241584.2-201ENST00000637142 2090 ntBASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 GABRB3-216ENST00000628124 5581 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 COPS8P2-201ENST00000473228 627 ntBASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 SIAH1P1-201ENST00000479411 923 ntBASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 AL158068.1-201ENST00000506116 616 ntBASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 AC108043.1-201ENST00000512696 574 ntBASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 TMEM97P2-201ENST00000517841 403 ntBASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 MAPK10-261ENST00000641050 3109 ntBASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC88AQ3V6T2 AP000866.6-201ENST00000638898 3579 ntBASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 RNA5SP443-201ENST00000363083 132 ntBASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 RNU1-49P-201ENST00000363468 159 ntBASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 AC245060.4-201ENST00000413293 1121 ntBASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 FABP7P2-201ENST00000429946 379 ntBASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 RPL34P33-201ENST00000486062 334 ntBASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 AC106800.3-201ENST00000511389 308 ntBASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 AC090616.1-201ENST00000583895 447 ntBASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 AC020916.2-201ENST00000591242 360 ntBASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 AP001823.1-201ENST00000604056 1003 ntBASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 AC104695.2-201ENST00000605056 775 ntBASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 KCNMB3P1-202ENST00000493696 3389 ntBASIC7.67□□□□□ -1.18
CCDC88AQ3V6T2 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 RNA5SP132-201ENST00000364725 118 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 MIR585-201ENST00000384887 94 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 AC073909.1-201ENST00000447112 999 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 RANP2-201ENST00000456833 229 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 ATP5LP3-201ENST00000514223 304 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 SETP21-201ENST00000514799 892 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 MIR1273E-201ENST00000581165 102 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 MIR7159-201ENST00000620587 66 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 CCT5-215ENST00000625723 135 ntTSL 5 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 OXSM-209ENST00000626005 309 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 AC138915.4-201ENST00000565549 4147 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 Z83820.1-201ENST00000456978 1499 ntBASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC88AQ3V6T2 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC7.66□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms