Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
FOXA1P55317 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
FOXA1P55317 AL157702.1-201ENST00000398764 426 ntBASIC6□□□□□ -1.45
FOXA1P55317 RPL23AP17-201ENST00000401064 499 ntBASIC6□□□□□ -1.45
FOXA1P55317 RNA5SP231-201ENST00000410496 138 ntBASIC6□□□□□ -1.45
FOXA1P55317 RPL21P50-201ENST00000417698 477 ntBASIC6□□□□□ -1.45
FOXA1P55317 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC6□□□□□ -1.45
FOXA1P55317 RPL34P27-201ENST00000428810 349 ntBASIC6□□□□□ -1.45
FOXA1P55317 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6□□□□□ -1.45
FOXA1P55317 GAPDHP23-201ENST00000444823 993 ntBASIC6□□□□□ -1.45
FOXA1P55317 NPM1P9-201ENST00000453156 844 ntBASIC6□□□□□ -1.45
FOXA1P55317 RPL31P11-202ENST00000454082 372 ntBASIC6□□□□□ -1.45
FOXA1P55317 TFP1-201ENST00000460564 572 ntTSL 4 BASIC6□□□□□ -1.45
FOXA1P55317 TFP1-203ENST00000490470 561 ntTSL 4 BASIC6□□□□□ -1.45
FOXA1P55317 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC6□□□□□ -1.45
FOXA1P55317 RNA5SP206-201ENST00000516703 121 ntBASIC6□□□□□ -1.45
FOXA1P55317 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC6□□□□□ -1.45
FOXA1P55317 OR6M2P-201ENST00000529831 871 ntBASIC6□□□□□ -1.45
FOXA1P55317 AP001858.2-201ENST00000536213 601 ntBASIC6□□□□□ -1.45
FOXA1P55317 DPPA3P2-201ENST00000553589 478 ntBASIC6□□□□□ -1.45
FOXA1P55317 RN7SL371P-201ENST00000578099 267 ntBASIC6□□□□□ -1.45
FOXA1P55317 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC6□□□□□ -1.45
FOXA1P55317 DYNLL1P1-201ENST00000595442 269 ntBASIC6□□□□□ -1.45
FOXA1P55317 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6□□□□□ -1.45
FOXA1P55317 AC036176.3-201ENST00000602456 418 ntBASIC6□□□□□ -1.45
FOXA1P55317 AC004890.3-201ENST00000605566 1095 ntBASIC6□□□□□ -1.45
FOXA1P55317 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC6□□□□□ -1.45
FOXA1P55317 AC091059.2-201ENST00000623355 614 ntBASIC6□□□□□ -1.45
FOXA1P55317 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6□□□□□ -1.45
FOXA1P55317 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
FOXA1P55317 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6□□□□□ -1.45
FOXA1P55317 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
FOXA1P55317 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
FOXA1P55317 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6□□□□□ -1.45
FOXA1P55317 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
FOXA1P55317 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
FOXA1P55317 AC024587.1-201ENST00000505925 2157 ntBASIC6□□□□□ -1.45
FOXA1P55317 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
FOXA1P55317 OR5M2P-202ENST00000641241 4242 ntBASIC6□□□□□ -1.45
FOXA1P55317 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
FOXA1P55317 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC6□□□□□ -1.45
FOXA1P55317 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6□□□□□ -1.45
FOXA1P55317 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6□□□□□ -1.45
FOXA1P55317 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
FOXA1P55317 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
FOXA1P55317 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC5.99□□□□□ -1.45
FOXA1P55317 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC5.99□□□□□ -1.45
FOXA1P55317 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
FOXA1P55317 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
FOXA1P55317 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
FOXA1P55317 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.99□□□□□ -1.45
FOXA1P55317 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
FOXA1P55317 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC5.99□□□□□ -1.45
FOXA1P55317 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 GNG5P2-201ENST00000372054 207 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
FOXA1P55317 ARSFP1-201ENST00000398758 477 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.99□□□□□ -1.45
FOXA1P55317 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC5.99□□□□□ -1.45
FOXA1P55317 AC092651.1-201ENST00000426110 312 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC5.99□□□□□ -1.45
FOXA1P55317 AC112492.2-201ENST00000432774 1030 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 AL645939.3-201ENST00000435408 225 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC5.99□□□□□ -1.45
FOXA1P55317 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC5.99□□□□□ -1.45
FOXA1P55317 RPL12P31-201ENST00000478433 450 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC5.99□□□□□ -1.45
FOXA1P55317 MRPS21P9-201ENST00000571150 257 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 MIR132-201ENST00000591554 101 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC5.99□□□□□ -1.45
FOXA1P55317 AC022106.1-201ENST00000612834 766 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 AC010998.3-201ENST00000613871 631 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 MIR6070-201ENST00000613967 103 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC5.99□□□□□ -1.45
FOXA1P55317 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
FOXA1P55317 ERG-202ENST00000398897 4651 ntTSL 5 BASIC5.99□□□□□ -1.45
FOXA1P55317 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
FOXA1P55317 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
FOXA1P55317 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.99□□□□□ -1.45
FOXA1P55317 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
FOXA1P55317 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
FOXA1P55317 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC5.99□□□□□ -1.45
FOXA1P55317 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
FOXA1P55317 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
FOXA1P55317 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
FOXA1P55317 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.98□□□□□ -1.45
FOXA1P55317 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
FOXA1P55317 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC5.98□□□□□ -1.45
FOXA1P55317 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.98□□□□□ -1.45
FOXA1P55317 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC5.98□□□□□ -1.45
FOXA1P55317 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC5.98□□□□□ -1.45
FOXA1P55317 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
FOXA1P55317 RNU1-49P-201ENST00000363468 159 ntBASIC5.98□□□□□ -1.45
FOXA1P55317 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.98□□□□□ -1.45
FOXA1P55317 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC5.98□□□□□ -1.45
FOXA1P55317 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC5.98□□□□□ -1.45
FOXA1P55317 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC5.98□□□□□ -1.45
FOXA1P55317 AC234771.4-201ENST00000441416 730 ntBASIC5.98□□□□□ -1.45
FOXA1P55317 AL133351.3-201ENST00000454998 193 ntBASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms