Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC7.99□□□□□ -1.13
COL18A1P39060 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC7.99□□□□□ -1.13
COL18A1P39060 LINC00534-203ENST00000523406 812 ntTSL 3 BASIC7.99□□□□□ -1.13
COL18A1P39060 AC022182.1-202ENST00000529234 580 ntTSL 2 BASIC7.99□□□□□ -1.13
COL18A1P39060 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
COL18A1P39060 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC7.99□□□□□ -1.13
COL18A1P39060 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC7.99□□□□□ -1.13
COL18A1P39060 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC7.99□□□□□ -1.13
COL18A1P39060 AC024940.4-201ENST00000605507 246 ntBASIC7.99□□□□□ -1.13
COL18A1P39060 MIR193BHG-214ENST00000641765 509 ntBASIC7.99□□□□□ -1.13
COL18A1P39060 ADAM22-205ENST00000398209 9144 ntAPPRIS P4 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 XIAP-202ENST00000371199 8591 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.13
COL18A1P39060 AC113615.1-201ENST00000507424 4121 ntTSL 2 BASIC7.99□□□□□ -1.13
COL18A1P39060 ATL3-201ENST00000398868 7135 ntAPPRIS P3 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC7.99□□□□□ -1.13
COL18A1P39060 AGXT2-206ENST00000618015 2181 ntTSL 5 BASIC7.99□□□□□ -1.13
COL18A1P39060 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC7.99□□□□□ -1.13
COL18A1P39060 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 MROH3P-201ENST00000435735 2676 ntBASIC7.99□□□□□ -1.13
COL18A1P39060 OR4K17-203ENST00000641633 5068 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
COL18A1P39060 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC7.99□□□□□ -1.13
COL18A1P39060 GON4L-218ENST00000620426 5506 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC7.99□□□□□ -1.13
COL18A1P39060 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC7.99□□□□□ -1.13
COL18A1P39060 CAV1-204ENST00000393470 598 ntTSL 4 BASIC7.99□□□□□ -1.13
COL18A1P39060 EEF1A1P29-201ENST00000416082 1096 ntBASIC7.99□□□□□ -1.13
COL18A1P39060 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC7.99□□□□□ -1.13
COL18A1P39060 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC7.99□□□□□ -1.13
COL18A1P39060 RPS3AP15-201ENST00000483874 781 ntBASIC7.99□□□□□ -1.13
COL18A1P39060 RPL32P9-201ENST00000487963 407 ntBASIC7.99□□□□□ -1.13
COL18A1P39060 AC008629.2-201ENST00000503783 483 ntBASIC7.99□□□□□ -1.13
COL18A1P39060 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC7.99□□□□□ -1.13
COL18A1P39060 MIR4505-201ENST00000582238 73 ntBASIC7.99□□□□□ -1.13
COL18A1P39060 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 CCT5-215ENST00000625723 135 ntTSL 5 BASIC7.99□□□□□ -1.13
COL18A1P39060 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC7.99□□□□□ -1.13
COL18A1P39060 PIGP-202ENST00000360525 6998 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 AC011379.1-201ENST00000508713 3025 ntBASIC7.99□□□□□ -1.13
COL18A1P39060 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC7.99□□□□□ -1.13
COL18A1P39060 GABRA4-201ENST00000264318 11973 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
COL18A1P39060 AL049634.1-201ENST00000453770 1720 ntBASIC7.99□□□□□ -1.13
COL18A1P39060 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL18A1P39060 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
COL18A1P39060 EPHA5-201ENST00000273854 8266 ntAPPRIS P4 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL18A1P39060 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC7.98□□□□□ -1.13
COL18A1P39060 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC7.98□□□□□ -1.13
COL18A1P39060 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
COL18A1P39060 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC7.98□□□□□ -1.13
COL18A1P39060 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
COL18A1P39060 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL18A1P39060 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
COL18A1P39060 RNA5SP183-201ENST00000362452 119 ntBASIC7.98□□□□□ -1.13
COL18A1P39060 OR6E1P-201ENST00000414424 923 ntBASIC7.98□□□□□ -1.13
COL18A1P39060 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC7.98□□□□□ -1.13
COL18A1P39060 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC7.98□□□□□ -1.13
COL18A1P39060 AC007386.1-201ENST00000455212 582 ntBASIC7.98□□□□□ -1.13
COL18A1P39060 AL133445.1-201ENST00000467051 452 ntBASIC7.98□□□□□ -1.13
COL18A1P39060 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC7.98□□□□□ -1.13
COL18A1P39060 OR7E158P-201ENST00000524483 910 ntBASIC7.98□□□□□ -1.13
COL18A1P39060 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL18A1P39060 RNU4ATAC-201ENST00000580972 127 ntBASIC7.98□□□□□ -1.13
COL18A1P39060 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL18A1P39060 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC7.98□□□□□ -1.13
COL18A1P39060 FO393422.1-201ENST00000603908 708 ntBASIC7.98□□□□□ -1.13
COL18A1P39060 AL021368.3-201ENST00000607119 578 ntBASIC7.98□□□□□ -1.13
COL18A1P39060 SNORD91A-202ENST00000609620 191 ntBASIC7.98□□□□□ -1.13
COL18A1P39060 uc_338.26-201ENST00000612659 160 ntBASIC7.98□□□□□ -1.13
COL18A1P39060 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC7.98□□□□□ -1.13
COL18A1P39060 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
COL18A1P39060 SPTAN1-202ENST00000372731 7889 ntAPPRIS P3 TSL 1 (best) BASIC7.98□□□□□ -1.13
COL18A1P39060 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
COL18A1P39060 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC7.98□□□□□ -1.13
COL18A1P39060 AC117409.1-201ENST00000470499 1310 ntBASIC7.98□□□□□ -1.13
COL18A1P39060 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC7.97□□□□□ -1.13
COL18A1P39060 AC061975.7-201ENST00000592016 2692 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 ZNF518A-201ENST00000316045 7277 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL18A1P39060 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC7.97□□□□□ -1.13
COL18A1P39060 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
COL18A1P39060 SELENOWP1-201ENST00000322792 252 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 AC012075.1-201ENST00000436549 580 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC7.97□□□□□ -1.13
COL18A1P39060 CUBNP2-201ENST00000443534 1139 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC7.97□□□□□ -1.13
COL18A1P39060 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC7.97□□□□□ -1.13
COL18A1P39060 GAPDHP71-201ENST00000511530 1003 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 RNU6-615P-201ENST00000516065 106 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 RNA5SP400-201ENST00000517155 111 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 AC073916.1-201ENST00000545095 130 ntBASIC7.97□□□□□ -1.13
COL18A1P39060 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC7.97□□□□□ -1.13
COL18A1P39060 FAM27E4-201ENST00000605259 342 ntBASIC7.97□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms