Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AL589863.1-201ENST00000595383 631 ntBASIC6.24□□□□□ -1.41
SHMT2P34897 AC012676.3-201ENST00000614983 479 ntBASIC6.24□□□□□ -1.41
SHMT2P34897 MIR6811-201ENST00000620409 58 ntBASIC6.24□□□□□ -1.41
SHMT2P34897 TEX41-293ENST00000630451 690 ntTSL 5 BASIC6.24□□□□□ -1.41
SHMT2P34897 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SHMT2P34897 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
SHMT2P34897 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
SHMT2P34897 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SHMT2P34897 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
SHMT2P34897 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SHMT2P34897 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SHMT2P34897 NEK2P2-201ENST00000438441 1338 ntBASIC6.24□□□□□ -1.41
SHMT2P34897 ZNF402P-201ENST00000404435 3100 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 MAPK10-261ENST00000641050 3109 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC6.23□□□□□ -1.41
SHMT2P34897 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
SHMT2P34897 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 AC009831.5-201ENST00000624000 3189 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC6.23□□□□□ -1.41
SHMT2P34897 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
SHMT2P34897 SNORD35A-201ENST00000363389 86 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 SNORA70.9-201ENST00000384370 135 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 AL451046.1-201ENST00000406097 534 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 AC002127.1-201ENST00000421305 225 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 AL157884.1-201ENST00000424561 454 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC6.23□□□□□ -1.41
SHMT2P34897 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.23□□□□□ -1.41
SHMT2P34897 EMC3-AS1-205ENST00000438698 534 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.23□□□□□ -1.41
SHMT2P34897 AL355355.1-201ENST00000442900 793 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 COX4I1P2-201ENST00000447446 547 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 VN1R38P-201ENST00000450265 887 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 YRDCP3-201ENST00000456507 480 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC6.23□□□□□ -1.41
SHMT2P34897 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC6.23□□□□□ -1.41
SHMT2P34897 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC6.23□□□□□ -1.41
SHMT2P34897 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC6.23□□□□□ -1.41
SHMT2P34897 AC106800.3-201ENST00000511389 308 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 IGKV1D-22-201ENST00000518953 324 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC6.23□□□□□ -1.41
SHMT2P34897 FAM66C-206ENST00000535567 724 ntTSL 5 BASIC6.23□□□□□ -1.41
SHMT2P34897 AC069234.2-202ENST00000535720 583 ntTSL 5 BASIC6.23□□□□□ -1.41
SHMT2P34897 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.23□□□□□ -1.41
SHMT2P34897 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC6.23□□□□□ -1.41
SHMT2P34897 WBP1LP12-201ENST00000604449 331 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.23□□□□□ -1.41
SHMT2P34897 MIR6889-201ENST00000613185 59 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 TCL6_3.1-201ENST00000619064 137 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 AC021422.1-201ENST00000621212 473 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 AC010325.3-201ENST00000641084 394 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 TTC41P-205ENST00000551270 3963 ntBASIC6.23□□□□□ -1.41
SHMT2P34897 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 ST7-203ENST00000393443 2360 ntTSL 2 BASIC6.23□□□□□ -1.41
SHMT2P34897 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC6.23□□□□□ -1.41
SHMT2P34897 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC6.23□□□□□ -1.41
SHMT2P34897 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
SHMT2P34897 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 PBRM1-207ENST00000409767 4849 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SHMT2P34897 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC6.22□□□□□ -1.41
SHMT2P34897 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SHMT2P34897 ZNF969P-201ENST00000510345 2341 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 AL353743.3-201ENST00000442109 1468 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.22□□□□□ -1.41
SHMT2P34897 AL033543.1-201ENST00000623440 13454 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC6.22□□□□□ -1.41
SHMT2P34897 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SHMT2P34897 AL139352.1-201ENST00000255183 1001 ntTSL 2 BASIC6.22□□□□□ -1.41
SHMT2P34897 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.22□□□□□ -1.41
SHMT2P34897 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.22□□□□□ -1.41
SHMT2P34897 RPL23AP18-201ENST00000416139 468 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 RPL6P21-201ENST00000418672 846 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 THEM7P-201ENST00000419556 672 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.22□□□□□ -1.41
SHMT2P34897 RPSAP32-201ENST00000432681 526 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.22□□□□□ -1.41
SHMT2P34897 ARMC4P1-201ENST00000438905 707 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 OR2L9P-201ENST00000444456 913 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC6.22□□□□□ -1.41
SHMT2P34897 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SHMT2P34897 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC6.22□□□□□ -1.41
SHMT2P34897 RPS27P20-201ENST00000492051 246 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 NPM1P27-201ENST00000502784 830 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 GUSBP9-201ENST00000510138 584 ntBASIC6.22□□□□□ -1.41
SHMT2P34897 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms