Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC089999.3-201ENST00000622440 577 ntBASIC6.38□□□□□ -1.39
MSH3P20585 NEK2P2-201ENST00000438441 1338 ntBASIC6.38□□□□□ -1.39
MSH3P20585 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSH3P20585 AC125238.2-201ENST00000430003 1440 ntBASIC6.38□□□□□ -1.39
MSH3P20585 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.38□□□□□ -1.39
MSH3P20585 FTO-215ENST00000636491 1676 ntTSL 5 BASIC6.38□□□□□ -1.39
MSH3P20585 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSH3P20585 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSH3P20585 ZNF402P-201ENST00000404435 3100 ntBASIC6.38□□□□□ -1.39
MSH3P20585 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSH3P20585 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.38□□□□□ -1.39
MSH3P20585 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSH3P20585 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSH3P20585 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSH3P20585 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.37□□□□□ -1.39
MSH3P20585 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSH3P20585 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSH3P20585 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSH3P20585 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
MSH3P20585 AL355377.1-201ENST00000621125 1653 ntBASIC6.37□□□□□ -1.39
MSH3P20585 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC6.37□□□□□ -1.39
MSH3P20585 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSH3P20585 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
MSH3P20585 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSH3P20585 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
MSH3P20585 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
MSH3P20585 SNORD35A-201ENST00000363389 86 ntBASIC6.37□□□□□ -1.39
MSH3P20585 SNORA70H-201ENST00000383910 135 ntBASIC6.37□□□□□ -1.39
MSH3P20585 SNORA70J-201ENST00000384182 135 ntBASIC6.37□□□□□ -1.39
MSH3P20585 GGA1-205ENST00000405147 575 ntTSL 4 BASIC6.37□□□□□ -1.39
MSH3P20585 AL133260.1-201ENST00000405720 405 ntBASIC6.37□□□□□ -1.39
MSH3P20585 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC6.37□□□□□ -1.39
MSH3P20585 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC6.37□□□□□ -1.39
MSH3P20585 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC6.37□□□□□ -1.39
MSH3P20585 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC6.37□□□□□ -1.39
MSH3P20585 AL157884.1-201ENST00000424561 454 ntBASIC6.37□□□□□ -1.39
MSH3P20585 AC097721.1-201ENST00000427150 1253 ntBASIC6.37□□□□□ -1.39
MSH3P20585 MED28P4-201ENST00000433137 572 ntBASIC6.37□□□□□ -1.39
MSH3P20585 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
MSH3P20585 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC6.37□□□□□ -1.39
MSH3P20585 AL355355.1-201ENST00000442900 793 ntBASIC6.37□□□□□ -1.39
MSH3P20585 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.37□□□□□ -1.39
MSH3P20585 RN7SL39P-201ENST00000462264 297 ntBASIC6.37□□□□□ -1.39
MSH3P20585 AC044810.1-201ENST00000480271 711 ntBASIC6.37□□□□□ -1.39
MSH3P20585 CT45A5-201ENST00000487941 1161 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
MSH3P20585 TRIM36-IT1-201ENST00000503723 881 ntBASIC6.37□□□□□ -1.39
MSH3P20585 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC6.37□□□□□ -1.39
MSH3P20585 AC106800.3-201ENST00000511389 308 ntBASIC6.37□□□□□ -1.39
MSH3P20585 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC6.37□□□□□ -1.39
MSH3P20585 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC6.37□□□□□ -1.39
MSH3P20585 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSH3P20585 AL133399.1-201ENST00000527476 298 ntBASIC6.37□□□□□ -1.39
MSH3P20585 AC135983.3-201ENST00000528049 1226 ntBASIC6.37□□□□□ -1.39
MSH3P20585 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSH3P20585 BTG1P1-201ENST00000540396 508 ntBASIC6.37□□□□□ -1.39
MSH3P20585 RPL41P2-201ENST00000544920 409 ntBASIC6.37□□□□□ -1.39
MSH3P20585 DCN-209ENST00000546745 1026 ntTSL 3 BASIC6.37□□□□□ -1.39
MSH3P20585 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC6.37□□□□□ -1.39
MSH3P20585 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC6.37□□□□□ -1.39
MSH3P20585 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC6.37□□□□□ -1.39
MSH3P20585 AC007066.2-202ENST00000566531 914 ntBASIC6.37□□□□□ -1.39
MSH3P20585 AC090616.1-201ENST00000583895 447 ntBASIC6.37□□□□□ -1.39
MSH3P20585 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC6.37□□□□□ -1.39
MSH3P20585 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC6.37□□□□□ -1.39
MSH3P20585 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC6.37□□□□□ -1.39
MSH3P20585 AC015819.1-201ENST00000613588 663 ntBASIC6.37□□□□□ -1.39
MSH3P20585 AC004836.1-201ENST00000623032 634 ntBASIC6.37□□□□□ -1.39
MSH3P20585 AC110373.1-201ENST00000505994 3505 ntBASIC6.37□□□□□ -1.39
MSH3P20585 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.37□□□□□ -1.39
MSH3P20585 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSH3P20585 ADGRL2-202ENST00000359929 4674 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSH3P20585 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSH3P20585 AC011455.2-201ENST00000599320 3336 ntBASIC6.37□□□□□ -1.39
MSH3P20585 AC073365.1-203ENST00000641055 1992 ntBASIC6.37□□□□□ -1.39
MSH3P20585 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.37□□□□□ -1.39
MSH3P20585 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSH3P20585 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.36□□□□□ -1.39
MSH3P20585 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
MSH3P20585 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSH3P20585 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSH3P20585 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSH3P20585 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.36□□□□□ -1.39
MSH3P20585 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSH3P20585 AC119674.1-213ENST00000641177 1386 ntBASIC6.36□□□□□ -1.39
MSH3P20585 OFD1P17-201ENST00000437639 3018 ntBASIC6.36□□□□□ -1.39
MSH3P20585 SNORD16-201ENST00000362803 99 ntBASIC6.36□□□□□ -1.39
MSH3P20585 YWHAZP4-201ENST00000392459 708 ntBASIC6.36□□□□□ -1.39
MSH3P20585 RN7SKP146-201ENST00000410242 334 ntBASIC6.36□□□□□ -1.39
MSH3P20585 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.36□□□□□ -1.39
MSH3P20585 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC6.36□□□□□ -1.39
MSH3P20585 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC6.36□□□□□ -1.39
MSH3P20585 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
MSH3P20585 CCNJP2-201ENST00000457810 1163 ntBASIC6.36□□□□□ -1.39
MSH3P20585 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.36□□□□□ -1.39
MSH3P20585 OR51A1P-201ENST00000511110 946 ntBASIC6.36□□□□□ -1.39
MSH3P20585 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.36□□□□□ -1.39
MSH3P20585 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC6.36□□□□□ -1.39
MSH3P20585 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.36□□□□□ -1.39
MSH3P20585 ZFAND1-204ENST00000517588 633 ntTSL 2 BASIC6.36□□□□□ -1.39
MSH3P20585 IGKV1D-22-201ENST00000518953 324 ntBASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms