Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 PLA2G2C-201ENST00000247992 453 ntAPPRIS P5 TSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 TAAR8-201ENST00000275200 1029 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 C12orf54-201ENST00000314014 887 ntAPPRIS P1 TSL 3 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 MSR1-203ENST00000355282 1167 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RN7SKP145-201ENST00000363291 303 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RN7SKP211-201ENST00000363328 315 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 TRAV18-201ENST00000390446 440 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AL109918.1-202ENST00000406724 436 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RN7SKP89-201ENST00000410774 242 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 GPS2P1-201ENST00000411761 986 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC211486.3-201ENST00000412694 621 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 CYP4F62P-201ENST00000417310 524 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 FTOP1-201ENST00000419363 861 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RPS7P12-201ENST00000422385 582 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 LINC01811-202ENST00000424786 787 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 PRUNEP1-201ENST00000425846 705 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 DDX11L10-201ENST00000430178 571 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 IGLV3-4-201ENST00000432300 244 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RBPMSLP-201ENST00000433427 502 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AL117338.1-201ENST00000434552 631 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 ACTBP12-201ENST00000435871 418 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 Z98747.1-201ENST00000438791 356 ntTSL 3 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC092568.1-201ENST00000440950 1284 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AL359711.1-201ENST00000441999 123 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC093157.1-202ENST00000446527 1045 ntTSL 3 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC073909.1-201ENST00000447112 999 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 ANAPC10-202ENST00000451299 928 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RAB28P2-201ENST00000454299 641 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 UBE2R2-AS1-201ENST00000454429 647 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC092569.1-201ENST00000455192 258 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RN7SL541P-201ENST00000464317 283 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RN7SL791P-201ENST00000467868 295 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC091152.1-201ENST00000472109 838 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RN7SL107P-201ENST00000478127 283 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RPL7AP10-201ENST00000481016 791 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 OR9N1P-201ENST00000491296 333 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RPL23AP80-201ENST00000495605 424 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC109830.1-203ENST00000506638 467 ntTSL 2 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC093835.1-201ENST00000508072 568 ntTSL 4 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC117473.1-201ENST00000508616 392 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC114786.3-201ENST00000509304 705 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC008591.1-202ENST00000515569 462 ntTSL 2 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC022639.1-201ENST00000523191 573 ntTSL 4 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 IGLVV-66-201ENST00000523818 341 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 CRYAB-205ENST00000526180 1017 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC011092.1-201ENST00000533128 1047 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC063923.2-201ENST00000562158 928 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC092718.5-201ENST00000562450 593 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC106785.4-201ENST00000569492 412 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RN7SL138P-201ENST00000577405 287 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 PPIAP14-201ENST00000577627 496 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 LINC01919-201ENST00000578610 568 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 CTSLP2-201ENST00000580501 394 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC090699.1-201ENST00000586264 321 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC020914.7-201ENST00000594477 545 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC078802.1-201ENST00000602879 843 ntTSL 4 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC233280.2-201ENST00000603917 1070 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AF146191.1-201ENST00000604941 889 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AL109918.2-201ENST00000605188 279 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC027271.1-201ENST00000610270 610 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC087633.2-208ENST00000612877 502 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC005383.1-201ENST00000622689 534 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC007224.2-201ENST00000625011 510 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 NPLOC4-221ENST00000625705 405 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC073488.11-201ENST00000633298 754 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AL158175.1-203ENST00000635654 1281 ntTSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 TRIM51FP-201ENST00000526452 1353 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 TRIM53CP-201ENST00000531490 1354 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 SLC2A3P4-201ENST00000521259 1471 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 VEZF1P1-201ENST00000423931 1541 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 OR5AQ1P-202ENST00000641257 1534 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AL513548.1-201ENST00000562904 1724 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 AC011755.1-201ENST00000623763 2049 ntBASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHKB-CPT1BH3BT56 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms