Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PCDHA3Q9Y5H8 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 AC093787.1-201ENST00000450396 207 ntBASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 TNXA-203ENST00000507684 2038 ntBASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PCDHA3Q9Y5H8 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 AL162430.1-201ENST00000480705 870 ntBASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.67■□□□□ 0.9
PCDHA3Q9Y5H8 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCDHA3Q9Y5H8 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 AL032819.2-201ENST00000624543 2162 ntBASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCDHA3Q9Y5H8 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.64■□□□□ 0.9
PCDHA3Q9Y5H8 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
PCDHA3Q9Y5H8 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
PCDHA3Q9Y5H8 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHA3Q9Y5H8 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHA3Q9Y5H8 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHA3Q9Y5H8 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PCDHA3Q9Y5H8 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.64■□□□□ 0.89
PCDHA3Q9Y5H8 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms