Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS35Q96QK1 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
VPS35Q96QK1 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
VPS35Q96QK1 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS35Q96QK1 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS35Q96QK1 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS35Q96QK1 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS35Q96QK1 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS35Q96QK1 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS35Q96QK1 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS35Q96QK1 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS35Q96QK1 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS35Q96QK1 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS35Q96QK1 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS35Q96QK1 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS35Q96QK1 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.65■□□□□ 0.74
VPS35Q96QK1 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS35Q96QK1 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.65■□□□□ 0.74
VPS35Q96QK1 MTDHP1-201ENST00000605323 784 ntBASIC19.65■□□□□ 0.74
VPS35Q96QK1 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS35Q96QK1 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS35Q96QK1 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS35Q96QK1 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS35Q96QK1 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS35Q96QK1 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.65■□□□□ 0.74
VPS35Q96QK1 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.65■□□□□ 0.74
VPS35Q96QK1 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS35Q96QK1 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS35Q96QK1 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VPS35Q96QK1 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
VPS35Q96QK1 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
VPS35Q96QK1 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.64■□□□□ 0.73
VPS35Q96QK1 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
VPS35Q96QK1 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS35Q96QK1 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
VPS35Q96QK1 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS35Q96QK1 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS35Q96QK1 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.64■□□□□ 0.73
VPS35Q96QK1 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS35Q96QK1 RN7SL471P-201ENST00000580476 299 ntBASIC19.64■□□□□ 0.73
VPS35Q96QK1 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS35Q96QK1 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
VPS35Q96QK1 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS35Q96QK1 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.64■□□□□ 0.73
VPS35Q96QK1 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS35Q96QK1 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
VPS35Q96QK1 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS35Q96QK1 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS35Q96QK1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS35Q96QK1 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS35Q96QK1 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS35Q96QK1 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS35Q96QK1 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS35Q96QK1 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS35Q96QK1 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS35Q96QK1 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS35Q96QK1 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS35Q96QK1 PRORSD1P-201ENST00000295112 541 ntBASIC19.63■□□□□ 0.73
VPS35Q96QK1 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS35Q96QK1 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.63■□□□□ 0.73
VPS35Q96QK1 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS35Q96QK1 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.63■□□□□ 0.73
VPS35Q96QK1 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.63■□□□□ 0.73
VPS35Q96QK1 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.63■□□□□ 0.73
VPS35Q96QK1 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS35Q96QK1 TMEM191A-211ENST00000637163 1067 ntBASIC19.63■□□□□ 0.73
VPS35Q96QK1 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS35Q96QK1 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
VPS35Q96QK1 AL691432.2-201ENST00000607222 2038 ntBASIC19.63■□□□□ 0.73
VPS35Q96QK1 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS35Q96QK1 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 AP001271.2-201ENST00000624018 1556 ntBASIC19.62■□□□□ 0.73
VPS35Q96QK1 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS35Q96QK1 AC018553.1-201ENST00000616682 1458 ntBASIC19.62■□□□□ 0.73
VPS35Q96QK1 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS35Q96QK1 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
VPS35Q96QK1 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS35Q96QK1 PRKY-204ENST00000533551 1019 ntBASIC19.62■□□□□ 0.73
VPS35Q96QK1 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS35Q96QK1 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS35Q96QK1 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms