Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 AC004980.1-204ENST00000429707 299 ntBASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 AL137013.1-201ENST00000432946 1228 ntBASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
USHBP1Q8N6Y0 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 KRT18P16-201ENST00000510337 1294 ntBASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USHBP1Q8N6Y0 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 AC079834.2-201ENST00000609776 1949 ntBASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 INGX-201ENST00000359239 846 ntBASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 YBX1P10-201ENST00000444752 975 ntBASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC26.18■■□□□ 1.78
USHBP1Q8N6Y0 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USHBP1Q8N6Y0 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USHBP1Q8N6Y0 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC26.17■■□□□ 1.78
USHBP1Q8N6Y0 KRT16P6-202ENST00000425692 1426 ntBASIC26.17■■□□□ 1.78
USHBP1Q8N6Y0 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC26.17■■□□□ 1.78
USHBP1Q8N6Y0 AC104076.2-201ENST00000448912 469 ntBASIC26.17■■□□□ 1.78
USHBP1Q8N6Y0 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC26.17■■□□□ 1.78
USHBP1Q8N6Y0 FDX2-206ENST00000492239 773 ntTSL 2 BASIC26.17■■□□□ 1.78
USHBP1Q8N6Y0 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC26.17■■□□□ 1.78
USHBP1Q8N6Y0 GOLGA6L3-201ENST00000507199 1679 ntBASIC26.17■■□□□ 1.78
USHBP1Q8N6Y0 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
USHBP1Q8N6Y0 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USHBP1Q8N6Y0 FSCN1P1-201ENST00000568912 1481 ntBASIC26.17■■□□□ 1.78
USHBP1Q8N6Y0 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 ECEL1P2-202ENST00000465689 757 ntBASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 AL590326.2-201ENST00000625139 305 ntBASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
USHBP1Q8N6Y0 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC26.15■■□□□ 1.78
USHBP1Q8N6Y0 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USHBP1Q8N6Y0 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USHBP1Q8N6Y0 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC26.15■■□□□ 1.78
USHBP1Q8N6Y0 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC26.15■■□□□ 1.78
USHBP1Q8N6Y0 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USHBP1Q8N6Y0 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USHBP1Q8N6Y0 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USHBP1Q8N6Y0 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
USHBP1Q8N6Y0 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USHBP1Q8N6Y0 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC26.15■■□□□ 1.78
USHBP1Q8N6Y0 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC26.14■■□□□ 1.78
USHBP1Q8N6Y0 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC26.14■■□□□ 1.78
USHBP1Q8N6Y0 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC26.14■■□□□ 1.78
USHBP1Q8N6Y0 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
USHBP1Q8N6Y0 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC26.14■■□□□ 1.78
USHBP1Q8N6Y0 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
USHBP1Q8N6Y0 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC26.14■■□□□ 1.78
USHBP1Q8N6Y0 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC26.14■■□□□ 1.78
USHBP1Q8N6Y0 TUBB8P6-201ENST00000436895 1288 ntBASIC26.14■■□□□ 1.78
USHBP1Q8N6Y0 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
USHBP1Q8N6Y0 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
USHBP1Q8N6Y0 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
USHBP1Q8N6Y0 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms