Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 AC006970.2-201ENST00000450065 779 ntBASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC40Q4G0X9 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC40Q4G0X9 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC40Q4G0X9 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC40Q4G0X9 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC40Q4G0X9 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC40Q4G0X9 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC40Q4G0X9 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
CCDC40Q4G0X9 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.75■■□□□ 1.07
CCDC40Q4G0X9 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC40Q4G0X9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.75■■□□□ 1.07
CCDC40Q4G0X9 AC009237.14-201ENST00000609975 1594 ntBASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC40Q4G0X9 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 GPX1P1-201ENST00000388829 606 ntBASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 AL121832.2-201ENST00000610979 668 ntBASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC40Q4G0X9 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC40Q4G0X9 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
CCDC40Q4G0X9 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms