Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
FOXA1P55317 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.17■□□□□ 0.66
FOXA1P55317 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.17■□□□□ 0.66
FOXA1P55317 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA1P55317 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA1P55317 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
FOXA1P55317 AC004911.1-201ENST00000416316 871 ntBASIC19.17■□□□□ 0.66
FOXA1P55317 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA1P55317 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA1P55317 C2orf69P4-201ENST00000565394 541 ntBASIC19.17■□□□□ 0.66
FOXA1P55317 OR10C1-204ENST00000622521 1039 ntBASIC19.17■□□□□ 0.66
FOXA1P55317 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA1P55317 Z82202.1-201ENST00000623446 1880 ntBASIC19.17■□□□□ 0.66
FOXA1P55317 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA1P55317 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA1P55317 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
FOXA1P55317 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
FOXA1P55317 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
FOXA1P55317 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.17■□□□□ 0.66
FOXA1P55317 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA1P55317 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.17■□□□□ 0.66
FOXA1P55317 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.17■□□□□ 0.66
FOXA1P55317 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
FOXA1P55317 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA1P55317 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXA1P55317 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.16■□□□□ 0.66
FOXA1P55317 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA1P55317 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA1P55317 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA1P55317 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
FOXA1P55317 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA1P55317 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA1P55317 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA1P55317 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA1P55317 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXA1P55317 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.16■□□□□ 0.66
FOXA1P55317 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.16■□□□□ 0.66
FOXA1P55317 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.16■□□□□ 0.66
FOXA1P55317 AL589743.5-201ENST00000616611 1050 ntBASIC19.16■□□□□ 0.66
FOXA1P55317 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA1P55317 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
FOXA1P55317 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA1P55317 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA1P55317 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
FOXA1P55317 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXA1P55317 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 PHGDH-210ENST00000641115 1638 ntBASIC19.15■□□□□ 0.66
FOXA1P55317 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
FOXA1P55317 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
FOXA1P55317 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 HLA-G-202ENST00000376815 851 ntBASIC19.15■□□□□ 0.66
FOXA1P55317 HLA-G-203ENST00000376818 1127 ntBASIC19.15■□□□□ 0.66
FOXA1P55317 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
FOXA1P55317 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.15■□□□□ 0.66
FOXA1P55317 AC022517.1-201ENST00000592429 346 ntBASIC19.15■□□□□ 0.66
FOXA1P55317 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.15■□□□□ 0.66
FOXA1P55317 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.15■□□□□ 0.66
FOXA1P55317 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
FOXA1P55317 TNXA-203ENST00000507684 2038 ntBASIC19.15■□□□□ 0.66
FOXA1P55317 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXA1P55317 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
FOXA1P55317 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
FOXA1P55317 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.14■□□□□ 0.65
FOXA1P55317 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
FOXA1P55317 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXA1P55317 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
FOXA1P55317 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.14■□□□□ 0.65
FOXA1P55317 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
FOXA1P55317 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.14■□□□□ 0.65
FOXA1P55317 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.14■□□□□ 0.65
FOXA1P55317 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.14■□□□□ 0.65
FOXA1P55317 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXA1P55317 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
FOXA1P55317 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.14■□□□□ 0.65
FOXA1P55317 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.14■□□□□ 0.65
FOXA1P55317 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXA1P55317 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.14■□□□□ 0.65
FOXA1P55317 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
FOXA1P55317 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.14■□□□□ 0.65
FOXA1P55317 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
FOXA1P55317 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
FOXA1P55317 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
FOXA1P55317 AL032819.2-201ENST00000624543 2162 ntBASIC19.13■□□□□ 0.65
FOXA1P55317 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
FOXA1P55317 AC004408.2-201ENST00000623613 2777 ntBASIC19.13■□□□□ 0.65
FOXA1P55317 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms