Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
USF1P22415 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC16.76■□□□□ 0.27
USF1P22415 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USF1P22415 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USF1P22415 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USF1P22415 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
USF1P22415 AL353807.1-201ENST00000427475 662 ntBASIC16.76■□□□□ 0.27
USF1P22415 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC16.76■□□□□ 0.27
USF1P22415 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USF1P22415 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC16.76■□□□□ 0.27
USF1P22415 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.76■□□□□ 0.27
USF1P22415 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
USF1P22415 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
USF1P22415 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USF1P22415 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
USF1P22415 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC16.76■□□□□ 0.27
USF1P22415 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USF1P22415 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USF1P22415 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
USF1P22415 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.76■□□□□ 0.27
USF1P22415 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
USF1P22415 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
USF1P22415 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
USF1P22415 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
USF1P22415 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.75■□□□□ 0.27
USF1P22415 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.75■□□□□ 0.27
USF1P22415 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
USF1P22415 AL355355.2-201ENST00000442321 338 ntBASIC16.75■□□□□ 0.27
USF1P22415 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
USF1P22415 KRT16P5-201ENST00000455284 522 ntBASIC16.75■□□□□ 0.27
USF1P22415 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
USF1P22415 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC16.75■□□□□ 0.27
USF1P22415 AL355075.4-201ENST00000554988 638 ntBASIC16.75■□□□□ 0.27
USF1P22415 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 AC010331.1-201ENST00000611423 582 ntBASIC16.75■□□□□ 0.27
USF1P22415 AC026471.5-201ENST00000615068 467 ntBASIC16.75■□□□□ 0.27
USF1P22415 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
USF1P22415 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.75■□□□□ 0.27
USF1P22415 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.75■□□□□ 0.27
USF1P22415 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC16.75■□□□□ 0.27
USF1P22415 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USF1P22415 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF1P22415 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF1P22415 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF1P22415 AC027702.1-201ENST00000563810 1770 ntBASIC16.74■□□□□ 0.27
USF1P22415 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.74■□□□□ 0.27
USF1P22415 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
USF1P22415 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC16.74■□□□□ 0.27
USF1P22415 NBPF21P-201ENST00000425093 1451 ntBASIC16.74■□□□□ 0.27
USF1P22415 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
USF1P22415 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USF1P22415 HTR7P1-201ENST00000538670 1336 ntBASIC16.74■□□□□ 0.27
USF1P22415 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.74■□□□□ 0.27
USF1P22415 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF1P22415 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC16.74■□□□□ 0.27
USF1P22415 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF1P22415 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USF1P22415 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USF1P22415 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.74■□□□□ 0.27
USF1P22415 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.74■□□□□ 0.27
USF1P22415 TSPY15P-201ENST00000457163 923 ntBASIC16.74■□□□□ 0.27
USF1P22415 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.74■□□□□ 0.27
USF1P22415 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF1P22415 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF1P22415 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF1P22415 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USF1P22415 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
USF1P22415 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC16.74■□□□□ 0.27
USF1P22415 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
USF1P22415 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC16.73■□□□□ 0.27
USF1P22415 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
USF1P22415 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USF1P22415 KRT8P36-201ENST00000489121 1440 ntBASIC16.73■□□□□ 0.27
USF1P22415 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
USF1P22415 AC006128.1-201ENST00000624704 1661 ntBASIC16.73■□□□□ 0.27
USF1P22415 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USF1P22415 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USF1P22415 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
USF1P22415 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.73■□□□□ 0.27
USF1P22415 AP003071.4-201ENST00000562276 1284 ntBASIC16.73■□□□□ 0.27
USF1P22415 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.73■□□□□ 0.27
USF1P22415 AF186192.3-201ENST00000583427 947 ntBASIC16.73■□□□□ 0.27
USF1P22415 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.73■□□□□ 0.27
USF1P22415 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
USF1P22415 AL121906.2-201ENST00000621597 723 ntBASIC16.73■□□□□ 0.27
USF1P22415 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms