Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL3A1P02461 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
COL3A1P02461 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL3A1P02461 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC26.31■■□□□ 1.8
COL3A1P02461 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC26.31■■□□□ 1.8
COL3A1P02461 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC26.31■■□□□ 1.8
COL3A1P02461 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC26.31■■□□□ 1.8
COL3A1P02461 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC26.31■■□□□ 1.8
COL3A1P02461 LINC01521-201ENST00000504184 1943 ntBASIC26.31■■□□□ 1.8
COL3A1P02461 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL3A1P02461 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
COL3A1P02461 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC26.3■■□□□ 1.8
COL3A1P02461 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL3A1P02461 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC26.3■■□□□ 1.8
COL3A1P02461 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL3A1P02461 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL3A1P02461 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC26.3■■□□□ 1.8
COL3A1P02461 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL3A1P02461 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
COL3A1P02461 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL3A1P02461 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL3A1P02461 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC26.3■■□□□ 1.8
COL3A1P02461 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
COL3A1P02461 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC26.3■■□□□ 1.8
COL3A1P02461 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL3A1P02461 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC26.3■■□□□ 1.8
COL3A1P02461 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
COL3A1P02461 AL135905.2-201ENST00000584934 1404 ntBASIC26.3■■□□□ 1.8
COL3A1P02461 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL3A1P02461 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL3A1P02461 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL3A1P02461 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC26.3■■□□□ 1.8
COL3A1P02461 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
COL3A1P02461 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL3A1P02461 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
COL3A1P02461 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL3A1P02461 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
COL3A1P02461 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC26.29■■□□□ 1.8
COL3A1P02461 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC26.29■■□□□ 1.8
COL3A1P02461 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
COL3A1P02461 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
COL3A1P02461 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC26.29■■□□□ 1.8
COL3A1P02461 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC26.29■■□□□ 1.8
COL3A1P02461 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL3A1P02461 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL3A1P02461 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC26.28■■□□□ 1.8
COL3A1P02461 AC009237.14-201ENST00000609975 1594 ntBASIC26.28■■□□□ 1.8
COL3A1P02461 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
COL3A1P02461 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC26.28■■□□□ 1.8
COL3A1P02461 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
COL3A1P02461 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
COL3A1P02461 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
COL3A1P02461 AL353807.1-201ENST00000427475 662 ntBASIC26.28■■□□□ 1.8
COL3A1P02461 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC26.28■■□□□ 1.8
COL3A1P02461 DHDH-203ENST00000522614 776 ntTSL 5 BASIC26.28■■□□□ 1.8
COL3A1P02461 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC26.28■■□□□ 1.8
COL3A1P02461 RPS15-203ENST00000586096 570 ntTSL 2 BASIC26.28■■□□□ 1.8
COL3A1P02461 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL3A1P02461 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
COL3A1P02461 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
COL3A1P02461 GOLGA2P11-201ENST00000562660 1621 ntBASIC26.27■■□□□ 1.8
COL3A1P02461 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
COL3A1P02461 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
COL3A1P02461 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL3A1P02461 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL3A1P02461 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
COL3A1P02461 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC26.27■■□□□ 1.8
COL3A1P02461 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC26.27■■□□□ 1.8
COL3A1P02461 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
COL3A1P02461 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC26.27■■□□□ 1.8
COL3A1P02461 AC004264.1-201ENST00000608354 794 ntBASIC26.27■■□□□ 1.8
COL3A1P02461 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC26.27■■□□□ 1.8
COL3A1P02461 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL3A1P02461 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL3A1P02461 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC26.27■■□□□ 1.8
COL3A1P02461 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL3A1P02461 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL3A1P02461 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL3A1P02461 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL3A1P02461 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC26.26■■□□□ 1.79
COL3A1P02461 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
COL3A1P02461 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
COL3A1P02461 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL3A1P02461 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC26.26■■□□□ 1.79
COL3A1P02461 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL3A1P02461 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC26.26■■□□□ 1.79
COL3A1P02461 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC26.26■■□□□ 1.79
COL3A1P02461 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC26.26■■□□□ 1.79
COL3A1P02461 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL3A1P02461 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC26.26■■□□□ 1.79
COL3A1P02461 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL3A1P02461 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
COL3A1P02461 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC26.26■■□□□ 1.79
COL3A1P02461 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL3A1P02461 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
COL3A1P02461 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
COL3A1P02461 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC26.25■■□□□ 1.79
COL3A1P02461 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC26.25■■□□□ 1.79
COL3A1P02461 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
COL3A1P02461 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms