Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGN4O00479 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGN4O00479 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGN4O00479 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGN4O00479 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGN4O00479 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGN4O00479 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGN4O00479 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGN4O00479 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.42■□□□□ 0.54
HMGN4O00479 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGN4O00479 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGN4O00479 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
HMGN4O00479 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
HMGN4O00479 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGN4O00479 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGN4O00479 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGN4O00479 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGN4O00479 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.42■□□□□ 0.54
HMGN4O00479 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGN4O00479 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGN4O00479 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGN4O00479 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGN4O00479 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.42■□□□□ 0.54
HMGN4O00479 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGN4O00479 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGN4O00479 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGN4O00479 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.42■□□□□ 0.54
HMGN4O00479 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGN4O00479 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGN4O00479 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGN4O00479 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
HMGN4O00479 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGN4O00479 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGN4O00479 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.41■□□□□ 0.54
HMGN4O00479 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
HMGN4O00479 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGN4O00479 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGN4O00479 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.41■□□□□ 0.54
HMGN4O00479 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
HMGN4O00479 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGN4O00479 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGN4O00479 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGN4O00479 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGN4O00479 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.41■□□□□ 0.54
HMGN4O00479 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGN4O00479 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGN4O00479 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGN4O00479 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGN4O00479 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGN4O00479 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGN4O00479 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
HMGN4O00479 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
HMGN4O00479 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGN4O00479 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.4■□□□□ 0.54
HMGN4O00479 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGN4O00479 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGN4O00479 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGN4O00479 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGN4O00479 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.4■□□□□ 0.54
HMGN4O00479 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGN4O00479 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.4■□□□□ 0.54
HMGN4O00479 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
HMGN4O00479 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGN4O00479 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGN4O00479 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGN4O00479 AC087289.5-201ENST00000586076 3175 ntBASIC18.4■□□□□ 0.54
HMGN4O00479 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGN4O00479 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
HMGN4O00479 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.39■□□□□ 0.54
HMGN4O00479 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGN4O00479 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGN4O00479 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
HMGN4O00479 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
HMGN4O00479 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
HMGN4O00479 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HMGN4O00479 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGN4O00479 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGN4O00479 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
HMGN4O00479 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
HMGN4O00479 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
HMGN4O00479 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGN4O00479 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.39■□□□□ 0.53
HMGN4O00479 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGN4O00479 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGN4O00479 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGN4O00479 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGN4O00479 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGN4O00479 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
HMGN4O00479 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGN4O00479 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
HMGN4O00479 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGN4O00479 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGN4O00479 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGN4O00479 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGN4O00479 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
HMGN4O00479 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.38■□□□□ 0.53
HMGN4O00479 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGN4O00479 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGN4O00479 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGN4O00479 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms