Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
LRRC53A6NM62 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC53A6NM62 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC53A6NM62 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC53A6NM62 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC53A6NM62 PHGDH-210ENST00000641115 1638 ntBASIC21.34■■□□□ 1.01
LRRC53A6NM62 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
LRRC53A6NM62 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.34■■□□□ 1.01
LRRC53A6NM62 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC53A6NM62 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC53A6NM62 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC53A6NM62 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC53A6NM62 Z82202.1-201ENST00000623446 1880 ntBASIC21.34■■□□□ 1.01
LRRC53A6NM62 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC53A6NM62 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC53A6NM62 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.34■■□□□ 1.01
LRRC53A6NM62 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC53A6NM62 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC53A6NM62 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LRRC53A6NM62 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LRRC53A6NM62 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
LRRC53A6NM62 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
LRRC53A6NM62 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LRRC53A6NM62 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.33■■□□□ 1
LRRC53A6NM62 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
LRRC53A6NM62 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LRRC53A6NM62 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.33■■□□□ 1
LRRC53A6NM62 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LRRC53A6NM62 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.33■■□□□ 1
LRRC53A6NM62 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
LRRC53A6NM62 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRRC53A6NM62 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
LRRC53A6NM62 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRRC53A6NM62 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.32■■□□□ 1
LRRC53A6NM62 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
LRRC53A6NM62 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.32■■□□□ 1
LRRC53A6NM62 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LRRC53A6NM62 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
LRRC53A6NM62 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.32■■□□□ 1
LRRC53A6NM62 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
LRRC53A6NM62 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.32■■□□□ 1
LRRC53A6NM62 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.32■■□□□ 1
LRRC53A6NM62 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.32■■□□□ 1
LRRC53A6NM62 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.32■■□□□ 1
LRRC53A6NM62 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
LRRC53A6NM62 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.32■■□□□ 1
LRRC53A6NM62 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
LRRC53A6NM62 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
LRRC53A6NM62 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
LRRC53A6NM62 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRRC53A6NM62 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
LRRC53A6NM62 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.31■■□□□ 1
LRRC53A6NM62 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
LRRC53A6NM62 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRRC53A6NM62 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRRC53A6NM62 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRRC53A6NM62 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.31■■□□□ 1
LRRC53A6NM62 AC023632.3-201ENST00000521633 145 ntBASIC21.31■■□□□ 1
LRRC53A6NM62 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.31■■□□□ 1
LRRC53A6NM62 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRRC53A6NM62 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRRC53A6NM62 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRRC53A6NM62 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.31■■□□□ 1
LRRC53A6NM62 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRRC53A6NM62 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRRC53A6NM62 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRRC53A6NM62 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
LRRC53A6NM62 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.31■■□□□ 1
LRRC53A6NM62 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LRRC53A6NM62 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRRC53A6NM62 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRRC53A6NM62 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRRC53A6NM62 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRRC53A6NM62 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.3■■□□□ 1
LRRC53A6NM62 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
LRRC53A6NM62 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRRC53A6NM62 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRRC53A6NM62 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
LRRC53A6NM62 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRRC53A6NM62 AC004911.1-201ENST00000416316 871 ntBASIC21.3■■□□□ 1
LRRC53A6NM62 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
LRRC53A6NM62 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.3■■□□□ 1
LRRC53A6NM62 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.3■■□□□ 1
LRRC53A6NM62 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.3■■□□□ 1
LRRC53A6NM62 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.3■■□□□ 1
LRRC53A6NM62 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.3■■□□□ 1
LRRC53A6NM62 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.3■■□□□ 1
LRRC53A6NM62 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.3■■□□□ 1
LRRC53A6NM62 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRRC53A6NM62 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
LRRC53A6NM62 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.3■■□□□ 1
LRRC53A6NM62 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC21.3■■□□□ 1
LRRC53A6NM62 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LRRC53A6NM62 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
LRRC53A6NM62 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.29■■□□□ 1
LRRC53A6NM62 TNXA-203ENST00000507684 2038 ntBASIC21.29■■□□□ 1
LRRC53A6NM62 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.29■■□□□ 1
LRRC53A6NM62 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.29■■□□□ 1
LRRC53A6NM62 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.29■■□□□ 1
LRRC53A6NM62 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms