Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RN7SKP63-201ENST00000363187 301 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 RNA5SP396-201ENST00000364834 120 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 PTMAP8-201ENST00000397729 342 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 SOD1P1-201ENST00000407803 440 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AL590084.1-201ENST00000407885 387 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 RN7SKP225-201ENST00000410405 352 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 RN7SKP131-201ENST00000410698 301 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 LINC01505-201ENST00000411451 686 ntTSL 3 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 VWC2L-IT1-201ENST00000416430 467 ntTSL 3 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 MTND2P18-201ENST00000419962 1030 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 CBWD5-209ENST00000430059 1242 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AP001048.1-201ENST00000436359 280 ntTSL 2 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC123904.1-201ENST00000441072 368 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 EXTL2P1-201ENST00000446218 416 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 MRPL35P4-201ENST00000453682 566 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 XACT-201ENST00000468762 497 ntTSL 5 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 RPL5P23-201ENST00000496040 868 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC106798.1-202ENST00000506819 589 ntTSL 4 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC098487.1-204ENST00000506972 610 ntTSL 3 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 DKK2-202ENST00000510463 908 ntTSL 3 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC010486.3-201ENST00000511602 785 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 RNU5A-4P-201ENST00000516588 111 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 IGKV2D-10-201ENST00000520194 281 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AP000926.4-201ENST00000527351 454 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 COX4I1P1-201ENST00000554239 509 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC044860.3-201ENST00000559957 368 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC009121.2-202ENST00000572706 505 ntTSL 3 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 MIR5708-201ENST00000579723 85 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC022662.1-201ENST00000580252 331 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 VN1R83P-201ENST00000595685 445 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AL589765.5-201ENST00000596133 515 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 EIF1P6-201ENST00000600054 334 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC108451.2-201ENST00000603875 538 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AL096855.2-201ENST00000605785 369 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 CUX2P1-201ENST00000606426 298 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 FRG2MP-201ENST00000613317 856 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 MIAT_exon1.1-201ENST00000617016 135 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC073488.8-201ENST00000631952 757 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AL512662.1-201ENST00000624850 2251 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AL391380.1-201ENST00000439300 1432 ntBASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 NXT2-203ENST00000372106 2562 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 MAP2-203ENST00000361559 2038 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 NPIPB6-201ENST00000532254 2016 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 AC113615.1-201ENST00000507424 4121 ntTSL 2 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 PDIK1L-202ENST00000374271 4279 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 SLC6A16-202ENST00000454748 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 MEF2C-217ENST00000510942 3446 ntTSL 5 BASIC8.25□□□□□ -1.09
TRAIPQ9BWF2 CCAR1-218ENST00000630771 4540 ntTSL 5 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 AC116351.1-201ENST00000399869 3482 ntTSL 2 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 AMOT-204ENST00000371962 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 AC053481.2-201ENST00000602493 1815 ntTSL 5 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 PSG10P-201ENST00000501199 1500 ntBASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 SLFN13-209ENST00000533791 4121 ntAPPRIS P1 TSL 2 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 AMPD3-204ENST00000444303 3994 ntTSL 2 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 RIPOR2-205ENST00000510784 3381 ntTSL 2 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 CD163-203ENST00000432237 3701 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 AL359091.1-201ENST00000449048 1734 ntBASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 CAP1-206ENST00000372805 2217 ntAPPRIS P3 TSL 1 (best) BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 OR4F21-201ENST00000320901 995 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 OR4F16-201ENST00000332831 995 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 OR52E6-202ENST00000379946 954 ntBASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 GSTA10P-201ENST00000412182 576 ntBASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 SNRK-AS1-201ENST00000422681 750 ntTSL 3 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 KCTD9P1-201ENST00000430462 1167 ntBASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 HNRNPDLP2-201ENST00000455248 751 ntBASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 AL354872.1-201ENST00000456361 967 ntBASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 OR4F3-201ENST00000456475 995 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
TRAIPQ9BWF2 RN7SL233P-201ENST00000469988 277 ntBASIC8.24□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms