Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
HDDC3Q8N4P3 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 INTS12-202ENST00000394735 1927 ntTSL 5 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC092821.3-202ENST00000641304 2767 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 MTCO1P46-201ENST00000451639 1491 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC004386.1-201ENST00000393214 761 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC017035.1-201ENST00000411999 1115 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC092865.3-201ENST00000425390 1026 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 GM2AP2-201ENST00000491764 562 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 H3F3AP3-201ENST00000497682 407 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC131392.1-201ENST00000506490 633 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 RNA5SP418-201ENST00000515951 117 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC023968.1-201ENST00000560719 475 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC026898.1-201ENST00000586404 571 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC107993.1-201ENST00000591343 684 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC020765.1-201ENST00000604296 328 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC124916.2-201ENST00000604416 224 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AL096712.1-201ENST00000614561 159 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 IPO5-229ENST00000631030 192 ntTSL 5 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AL357140.4-201ENST00000636827 412 ntBASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 LINC01772-201ENST00000457898 3245 ntTSL 2 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC6.56□□□□□ -1.36
HDDC3Q8N4P3 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 TM9SF4-202ENST00000398022 3978 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 AC009812.3-201ENST00000523871 3766 ntTSL 4 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 MIR541-201ENST00000401360 84 ntBASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 RNA5SP198-201ENST00000410376 127 ntBASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 RPS21P8-201ENST00000413365 247 ntBASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 SERPINA7P1-201ENST00000443077 631 ntBASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 SETP20-201ENST00000457046 852 ntBASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 AC117395.1-201ENST00000487390 403 ntBASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 AL133399.1-201ENST00000527476 298 ntBASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 AC004232.2-201ENST00000574245 821 ntBASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 AC119501.1-201ENST00000603646 475 ntBASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 AC091167.5-201ENST00000605689 894 ntBASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 MIR6811-201ENST00000620409 58 ntBASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 LINC02495-203ENST00000636704 242 ntBASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 ST7-203ENST00000393443 2360 ntTSL 2 BASIC6.55□□□□□ -1.36
HDDC3Q8N4P3 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 156.7 ms