Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC5.71□□□□□ -1.5
H3F3AP84243 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
H3F3AP84243 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
H3F3AP84243 RN7SKP146-201ENST00000410242 334 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 RN7SKP38-201ENST00000410782 309 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 SMARCE1P1-201ENST00000417747 1186 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC5.71□□□□□ -1.5
H3F3AP84243 AC002127.1-201ENST00000421305 225 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
H3F3AP84243 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC5.71□□□□□ -1.5
H3F3AP84243 AL513348.1-201ENST00000435554 440 ntTSL 3 BASIC5.71□□□□□ -1.5
H3F3AP84243 AC245291.3-201ENST00000443400 292 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
H3F3AP84243 AC128716.1-201ENST00000475129 166 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC5.71□□□□□ -1.5
H3F3AP84243 RPL17P2-201ENST00000491913 451 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 RNA5SP418-201ENST00000515951 117 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.71□□□□□ -1.5
H3F3AP84243 IGHV1-14-201ENST00000523391 241 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC5.71□□□□□ -1.5
H3F3AP84243 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC5.71□□□□□ -1.5
H3F3AP84243 AC233702.7-202ENST00000582941 211 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC5.71□□□□□ -1.5
H3F3AP84243 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC5.71□□□□□ -1.5
H3F3AP84243 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 AC091193.1-201ENST00000604640 448 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 AC011891.2-201ENST00000604949 397 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC5.71□□□□□ -1.5
H3F3AP84243 AL008723.3-201ENST00000608926 449 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 MIR6813-201ENST00000621638 56 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 MIR6823-201ENST00000622118 61 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 AC007603.3-201ENST00000636915 979 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.71□□□□□ -1.5
H3F3AP84243 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
H3F3AP84243 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC5.71□□□□□ -1.5
H3F3AP84243 CREM-217ENST00000439705 2306 ntTSL 5 BASIC5.71□□□□□ -1.5
H3F3AP84243 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
H3F3AP84243 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
H3F3AP84243 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.71□□□□□ -1.5
H3F3AP84243 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
H3F3AP84243 MAPK10-287ENST00000641217 3037 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
H3F3AP84243 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.71□□□□□ -1.5
H3F3AP84243 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
H3F3AP84243 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
H3F3AP84243 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.71□□□□□ -1.5
H3F3AP84243 AL136984.1-201ENST00000607611 1893 ntBASIC5.71□□□□□ -1.5
H3F3AP84243 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.7□□□□□ -1.5
H3F3AP84243 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC5.7□□□□□ -1.5
H3F3AP84243 AC009135.2-201ENST00000624136 1768 ntBASIC5.7□□□□□ -1.5
H3F3AP84243 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC5.7□□□□□ -1.5
H3F3AP84243 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.7□□□□□ -1.5
H3F3AP84243 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC5.7□□□□□ -1.5
H3F3AP84243 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 AP004289.1-201ENST00000436307 2205 ntBASIC5.7□□□□□ -1.5
H3F3AP84243 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
H3F3AP84243 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC5.7□□□□□ -1.5
H3F3AP84243 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC5.7□□□□□ -1.5
H3F3AP84243 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
H3F3AP84243 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
H3F3AP84243 OR11H13P-201ENST00000359695 979 ntBASIC5.7□□□□□ -1.5
H3F3AP84243 RNA5SP485-201ENST00000365053 119 ntBASIC5.7□□□□□ -1.5
H3F3AP84243 MIR191-201ENST00000384873 92 ntBASIC5.7□□□□□ -1.5
H3F3AP84243 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
H3F3AP84243 RNA5SP198-201ENST00000410376 127 ntBASIC5.7□□□□□ -1.5
H3F3AP84243 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC5.7□□□□□ -1.5
H3F3AP84243 AL353626.3-201ENST00000413399 657 ntBASIC5.7□□□□□ -1.5
H3F3AP84243 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC5.7□□□□□ -1.5
H3F3AP84243 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC5.7□□□□□ -1.5
H3F3AP84243 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC5.7□□□□□ -1.5
H3F3AP84243 AC234771.2-201ENST00000445718 597 ntBASIC5.7□□□□□ -1.5
H3F3AP84243 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC5.7□□□□□ -1.5
H3F3AP84243 RPL12P31-201ENST00000478433 450 ntBASIC5.7□□□□□ -1.5
H3F3AP84243 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
H3F3AP84243 KHDC1P1-201ENST00000511053 508 ntBASIC5.7□□□□□ -1.5
H3F3AP84243 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.7□□□□□ -1.5
H3F3AP84243 DEFB134-202ENST00000526438 1068 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC5.7□□□□□ -1.5
H3F3AP84243 TNFRSF17-201ENST00000053243 994 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC5.7□□□□□ -1.5
H3F3AP84243 AC010326.3-201ENST00000597780 679 ntTSL 5 BASIC5.7□□□□□ -1.5
H3F3AP84243 NDUFB9P1-201ENST00000604683 510 ntBASIC5.7□□□□□ -1.5
H3F3AP84243 AP003789.1-201ENST00000617737 605 ntBASIC5.7□□□□□ -1.5
H3F3AP84243 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
H3F3AP84243 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
H3F3AP84243 AC006213.6-201ENST00000623722 4179 ntBASIC5.7□□□□□ -1.5
H3F3AP84243 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
H3F3AP84243 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC5.7□□□□□ -1.5
H3F3AP84243 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 149.8 ms