Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 QRSL1P1-201ENST00000400977 1540 ntBASIC7.57□□□□□ -1.2
HLA-DOAP06340 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
HLA-DOAP06340 AL023806.3-201ENST00000638502 2704 ntBASIC7.57□□□□□ -1.2
HLA-DOAP06340 AC110597.1-201ENST00000562669 3176 ntBASIC7.57□□□□□ -1.2
HLA-DOAP06340 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
HLA-DOAP06340 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 AL359976.1-201ENST00000418655 3528 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 SMARCE1P6-201ENST00000398372 1216 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 MTATP6P11-201ENST00000428071 670 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 AC079807.1-201ENST00000429993 481 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 RSL24D1P8-201ENST00000434442 492 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 HMGN1P2-201ENST00000445197 310 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 AC106800.3-201ENST00000511389 308 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 AC009879.1-201ENST00000520029 839 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 AL139041.1-201ENST00000605480 610 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 AC091167.5-201ENST00000605689 894 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 AL132640.3-201ENST00000630473 177 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 AC138627.1-204ENST00000641894 765 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 CNPY1-201ENST00000321736 2378 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 AC006019.2-201ENST00000451116 3044 ntTSL 2 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 AC010624.4-201ENST00000597606 1351 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 TEKT1-201ENST00000338694 3421 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 SELE-203ENST00000367775 3389 ntTSL 5 BASIC7.56□□□□□ -1.2
HLA-DOAP06340 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
HLA-DOAP06340 AC009120.2-204ENST00000621548 2032 ntBASIC7.56□□□□□ -1.2
HLA-DOAP06340 DMD-202ENST00000343523 5623 ntTSL 5 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 BRD7P6-201ENST00000431406 1860 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HLA-DOAP06340 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HLA-DOAP06340 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HLA-DOAP06340 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC7.55□□□□□ -1.2
HLA-DOAP06340 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HLA-DOAP06340 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HLA-DOAP06340 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HLA-DOAP06340 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 VN1R3-201ENST00000418822 919 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC110602.1-201ENST00000437414 318 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC092905.1-201ENST00000467527 949 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 SNORA58-201ENST00000505219 137 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 IGKV1D-22-201ENST00000518953 324 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC036111.2-201ENST00000533247 901 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC092451.2-201ENST00000538746 658 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC233699.1-201ENST00000569955 1168 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC005726.4-201ENST00000582858 458 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC005332.4-201ENST00000592752 579 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC005972.3-201ENST00000606304 481 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC073389.3-201ENST00000609434 935 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 MALAT1-212ENST00000618132 725 ntTSL 2 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC127070.3-201ENST00000503695 3263 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 CXCR2-201ENST00000318507 2879 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HLA-DOAP06340 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC7.55□□□□□ -1.2
HLA-DOAP06340 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC011455.2-201ENST00000599320 3336 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC7.55□□□□□ -1.2
HLA-DOAP06340 AC127024.8-201ENST00000623719 2094 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 MROH3P-201ENST00000435735 2676 ntBASIC7.55□□□□□ -1.2
HLA-DOAP06340 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
HLA-DOAP06340 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC7.54□□□□□ -1.2
HLA-DOAP06340 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC7.54□□□□□ -1.2
HLA-DOAP06340 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC7.54□□□□□ -1.2
HLA-DOAP06340 AC105114.1-201ENST00000624795 1862 ntBASIC7.54□□□□□ -1.2
HLA-DOAP06340 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC7.54□□□□□ -1.2
HLA-DOAP06340 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC7.54□□□□□ -1.2
HLA-DOAP06340 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC7.54□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms