Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL139184.1-202ENST00000422303 222 ntBASIC6.04□□□□□ -1.44
SOX3P41225 AC007179.2-206ENST00000434611 467 ntTSL 3 BASIC6.04□□□□□ -1.44
SOX3P41225 CLNS1AP1-201ENST00000435954 682 ntBASIC6.04□□□□□ -1.44
SOX3P41225 RBMY2AP-201ENST00000445405 1157 ntBASIC6.04□□□□□ -1.44
SOX3P41225 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC6.04□□□□□ -1.44
SOX3P41225 RBMY2CP-201ENST00000448575 1157 ntBASIC6.04□□□□□ -1.44
SOX3P41225 RBMY2DP-202ENST00000448881 1157 ntBASIC6.04□□□□□ -1.44
SOX3P41225 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SOX3P41225 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC6.04□□□□□ -1.44
SOX3P41225 SNX24-205ENST00000506996 588 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SOX3P41225 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC6.04□□□□□ -1.44
SOX3P41225 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.04□□□□□ -1.44
SOX3P41225 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC6.04□□□□□ -1.44
SOX3P41225 AC124891.1-201ENST00000536322 519 ntBASIC6.04□□□□□ -1.44
SOX3P41225 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC6.04□□□□□ -1.44
SOX3P41225 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC6.04□□□□□ -1.44
SOX3P41225 AC004805.3-201ENST00000603178 310 ntBASIC6.04□□□□□ -1.44
SOX3P41225 MIR6780B-201ENST00000610307 79 ntBASIC6.04□□□□□ -1.44
SOX3P41225 IGKV2OR2-10-201ENST00000613976 311 ntBASIC6.04□□□□□ -1.44
SOX3P41225 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC6.04□□□□□ -1.44
SOX3P41225 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.04□□□□□ -1.44
SOX3P41225 AC010809.3-201ENST00000621310 641 ntBASIC6.04□□□□□ -1.44
SOX3P41225 AC012254.5-201ENST00000623573 478 ntBASIC6.04□□□□□ -1.44
SOX3P41225 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC6.04□□□□□ -1.44
SOX3P41225 IMMTP1-201ENST00000435590 2219 ntBASIC6.04□□□□□ -1.44
SOX3P41225 AC005702.3-201ENST00000585345 1447 ntBASIC6.04□□□□□ -1.44
SOX3P41225 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
SOX3P41225 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.04□□□□□ -1.44
SOX3P41225 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.04□□□□□ -1.44
SOX3P41225 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
SOX3P41225 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.04□□□□□ -1.44
SOX3P41225 HSPD1P8-201ENST00000400121 1658 ntBASIC6.04□□□□□ -1.44
SOX3P41225 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
SOX3P41225 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.04□□□□□ -1.44
SOX3P41225 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.03□□□□□ -1.44
SOX3P41225 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.03□□□□□ -1.44
SOX3P41225 SNX18P3-202ENST00000565670 1750 ntBASIC6.03□□□□□ -1.44
SOX3P41225 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC6.03□□□□□ -1.44
SOX3P41225 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC6.03□□□□□ -1.44
SOX3P41225 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
SOX3P41225 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 OR11H13P-201ENST00000359695 979 ntBASIC6.03□□□□□ -1.44
SOX3P41225 RN7SKP250-201ENST00000363924 321 ntBASIC6.03□□□□□ -1.44
SOX3P41225 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC6.03□□□□□ -1.44
SOX3P41225 AC007568.1-201ENST00000422912 471 ntBASIC6.03□□□□□ -1.44
SOX3P41225 Z68868.1-201ENST00000429048 544 ntBASIC6.03□□□□□ -1.44
SOX3P41225 BMP6P1-201ENST00000431230 679 ntBASIC6.03□□□□□ -1.44
SOX3P41225 H3F3BP1-201ENST00000440551 403 ntBASIC6.03□□□□□ -1.44
SOX3P41225 AL355355.1-201ENST00000442900 793 ntBASIC6.03□□□□□ -1.44
SOX3P41225 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC6.03□□□□□ -1.44
SOX3P41225 RPL23AP68-201ENST00000480924 445 ntBASIC6.03□□□□□ -1.44
SOX3P41225 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.03□□□□□ -1.44
SOX3P41225 AC022415.1-202ENST00000486612 523 ntBASIC6.03□□□□□ -1.44
SOX3P41225 RPL5P14-201ENST00000494197 878 ntBASIC6.03□□□□□ -1.44
SOX3P41225 AL117692.1-201ENST00000494283 713 ntBASIC6.03□□□□□ -1.44
SOX3P41225 GUSBP9-201ENST00000510138 584 ntBASIC6.03□□□□□ -1.44
SOX3P41225 NEDD8-203ENST00000524927 653 ntTSL 2 BASIC6.03□□□□□ -1.44
SOX3P41225 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC6.03□□□□□ -1.44
SOX3P41225 RPL3P13-201ENST00000550415 216 ntBASIC6.03□□□□□ -1.44
SOX3P41225 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC6.03□□□□□ -1.44
SOX3P41225 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.03□□□□□ -1.44
SOX3P41225 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.03□□□□□ -1.44
SOX3P41225 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.03□□□□□ -1.44
SOX3P41225 AC063977.7-201ENST00000594454 337 ntBASIC6.03□□□□□ -1.44
SOX3P41225 AL589765.6-201ENST00000601909 549 ntBASIC6.03□□□□□ -1.44
SOX3P41225 BUB1P1-201ENST00000603541 607 ntBASIC6.03□□□□□ -1.44
SOX3P41225 WBP1LP12-201ENST00000604449 331 ntBASIC6.03□□□□□ -1.44
SOX3P41225 AC011891.2-201ENST00000604949 397 ntBASIC6.03□□□□□ -1.44
SOX3P41225 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC6.03□□□□□ -1.44
SOX3P41225 CNTNAP3P1-201ENST00000616657 906 ntBASIC6.03□□□□□ -1.44
SOX3P41225 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.03□□□□□ -1.44
SOX3P41225 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 NAPG-201ENST00000322897 3548 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.03□□□□□ -1.44
SOX3P41225 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.03□□□□□ -1.44
SOX3P41225 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SOX3P41225 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
SOX3P41225 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
SOX3P41225 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SOX3P41225 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
SOX3P41225 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.02□□□□□ -1.45
SOX3P41225 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
SOX3P41225 AC097634.1-201ENST00000604491 2467 ntBASIC6.02□□□□□ -1.45
SOX3P41225 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SOX3P41225 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SOX3P41225 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SOX3P41225 CASC19-228ENST00000641414 1684 ntBASIC6.02□□□□□ -1.45
SOX3P41225 USP46-202ENST00000451218 4622 ntTSL 5 BASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms