Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.05□□□□□ -1.44
COL5A1P20908 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC6.05□□□□□ -1.44
COL5A1P20908 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
COL5A1P20908 PPCS-201ENST00000372556 984 ntTSL 2 BASIC6.05□□□□□ -1.44
COL5A1P20908 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
COL5A1P20908 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.05□□□□□ -1.44
COL5A1P20908 AL161793.1-201ENST00000435021 445 ntTSL 3 BASIC6.05□□□□□ -1.44
COL5A1P20908 TUBB4BP6-201ENST00000437576 479 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 PPIAP10-201ENST00000438675 458 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 DNAJC19P5-201ENST00000443295 316 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 ACA64.1-201ENST00000459171 127 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 RN7SL799P-201ENST00000475891 298 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 AC022206.1-201ENST00000495947 347 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
COL5A1P20908 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC6.05□□□□□ -1.44
COL5A1P20908 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC6.05□□□□□ -1.44
COL5A1P20908 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 AC007225.2-201ENST00000562529 256 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC6.05□□□□□ -1.44
COL5A1P20908 AC009237.12-201ENST00000604755 742 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 SDR42E1P1-201ENST00000611327 477 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 MIR6809-201ENST00000612189 116 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 AC005393.1-201ENST00000617916 584 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 AC096708.4-201ENST00000620563 552 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 AC127024.6-201ENST00000621598 424 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 WDR75-207ENST00000631047 270 ntTSL 5 BASIC6.05□□□□□ -1.44
COL5A1P20908 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC6.05□□□□□ -1.44
COL5A1P20908 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 KCNMB3P1-202ENST00000493696 3389 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 NYAP2-202ENST00000636099 5461 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
COL5A1P20908 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.05□□□□□ -1.44
COL5A1P20908 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 MAPK10-287ENST00000641217 3037 ntBASIC6.05□□□□□ -1.44
COL5A1P20908 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
COL5A1P20908 SPARCL1-205ENST00000503414 2520 ntTSL 2 BASIC6.05□□□□□ -1.44
COL5A1P20908 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 ZNF827-203ENST00000508784 7463 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC6.05□□□□□ -1.44
COL5A1P20908 PDE4DIP-203ENST00000369349 4677 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
COL5A1P20908 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.05□□□□□ -1.44
COL5A1P20908 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC6.04□□□□□ -1.44
COL5A1P20908 AC024651.2-201ENST00000562480 2098 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC6.04□□□□□ -1.44
COL5A1P20908 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC6.04□□□□□ -1.44
COL5A1P20908 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 RNU1-134P-201ENST00000362935 165 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 AC008171.1-201ENST00000395058 200 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 AC016908.1-201ENST00000442571 1219 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC6.04□□□□□ -1.44
COL5A1P20908 ZNF619P1-201ENST00000446539 752 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 AP006222.1-205ENST00000450734 457 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 GEMIN2P1-201ENST00000454246 752 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 AC091965.3-201ENST00000506236 208 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC6.04□□□□□ -1.44
COL5A1P20908 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 RNA5SP438-201ENST00000516561 112 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC6.04□□□□□ -1.44
COL5A1P20908 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC6.04□□□□□ -1.44
COL5A1P20908 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC6.04□□□□□ -1.44
COL5A1P20908 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.04□□□□□ -1.44
COL5A1P20908 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC6.04□□□□□ -1.44
COL5A1P20908 AC092681.3-201ENST00000609463 678 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 AC004477.3-201ENST00000614061 590 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 MIR6730-201ENST00000622213 67 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 AL049767.1-202ENST00000637826 242 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 ZNF268-209ENST00000541009 3773 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
COL5A1P20908 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 AL136981.1-203ENST00000451452 3844 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.04□□□□□ -1.44
COL5A1P20908 ERG-205ENST00000398910 4954 ntTSL 5 BASIC6.04□□□□□ -1.44
COL5A1P20908 RAD17P2-201ENST00000451754 1977 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 TRIM2-203ENST00000437508 3832 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 AL731556.1-201ENST00000394628 3711 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
COL5A1P20908 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 AC015689.2-201ENST00000528172 1738 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
COL5A1P20908 MIR143-201ENST00000385300 106 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 Y_RNA.625-201ENST00000411256 107 ntBASIC6.04□□□□□ -1.44
COL5A1P20908 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms