Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SNORA77.2-201ENST00000408571 112 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 PSMD10P2-201ENST00000432890 672 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RNA5SP271-201ENST00000516700 88 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AL390882.1-201ENST00000618821 594 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 BRD7P6-201ENST00000431406 1860 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AL354854.1-201ENST00000455940 1363 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RNA5SP443-201ENST00000363083 132 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 Z68694.1-201ENST00000413929 841 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 GTF3AP1-201ENST00000416942 1004 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC083862.1-201ENST00000427378 1242 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AL355607.1-201ENST00000427745 295 ntTSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 SNX18P24-201ENST00000505249 671 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 5S_rRNA.28-201ENST00000638107 119 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC119674.1-217ENST00000641942 1086 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC093278.2-201ENST00000564956 2485 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 BMS1P13-201ENST00000417301 885 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AL645939.3-201ENST00000435408 225 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 BMS1P10-201ENST00000443754 1120 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RPL7AP23-201ENST00000482625 776 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC124945.1-201ENST00000485133 188 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC006499.4-201ENST00000510947 694 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AP003115.1-201ENST00000569849 463 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 NPM1P45-201ENST00000583151 559 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 OSTC-205ENST00000613215 876 ntTSL 2 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AP001052.1-201ENST00000626421 99 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 CASC19-208ENST00000641056 1292 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 CASC19-227ENST00000641411 1285 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 DDX43P1-201ENST00000510713 1763 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 YWHAZP6-201ENST00000399764 738 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC002127.1-201ENST00000421305 225 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AL354794.2-201ENST00000424795 1248 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AL590004.3-202ENST00000445883 451 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 HLA-DPA3-207ENST00000454398 229 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC079905.1-201ENST00000549280 475 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AL355333.1-201ENST00000605632 279 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AP005212.3-201ENST00000619964 528 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 IFNA13-202ENST00000610660 1539 ntAPPRIS P2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 Z99129.3-201ENST00000624363 6430 ntTSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AL731556.1-201ENST00000394628 3711 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 ZNF91-202ENST00000397082 3572 ntAPPRIS ALT2 TSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 RNF145-205ENST00000518802 2603 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 PFN2-209ENST00000481275 560 ntTSL 4 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC106872.4-201ENST00000510050 523 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 UBXN8-201ENST00000265616 1450 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 KIAA1328-207ENST00000591619 5881 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 AL353796.1-201ENST00000561542 3241 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 CTAGE11P-201ENST00000451540 2353 ntBASIC1.97□□□□□ -2.09
SYNE1Q8NF91 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
SYNE1Q8NF91 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms