Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC6.85□□□□□ -1.31
HDAC4P56524 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC6.85□□□□□ -1.31
HDAC4P56524 IGKV2OR2-7-201ENST00000604652 304 ntBASIC6.85□□□□□ -1.31
HDAC4P56524 U91328.4-201ENST00000608919 517 ntBASIC6.85□□□□□ -1.31
HDAC4P56524 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
HDAC4P56524 AC021422.1-201ENST00000621212 473 ntBASIC6.85□□□□□ -1.31
HDAC4P56524 AL138693.1-201ENST00000622219 129 ntBASIC6.85□□□□□ -1.31
HDAC4P56524 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
HDAC4P56524 CDY5P-201ENST00000411487 1580 ntBASIC6.85□□□□□ -1.31
HDAC4P56524 CDY9P-201ENST00000451397 1580 ntBASIC6.85□□□□□ -1.31
HDAC4P56524 TCF12-205ENST00000537840 1598 ntTSL 2 BASIC6.85□□□□□ -1.31
HDAC4P56524 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC6.85□□□□□ -1.31
HDAC4P56524 TGIF1-211ENST00000548489 1536 ntTSL 3 BASIC6.85□□□□□ -1.31
HDAC4P56524 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
HDAC4P56524 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
HDAC4P56524 LRRC37A12P-201ENST00000454917 1801 ntBASIC6.85□□□□□ -1.31
HDAC4P56524 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC6.85□□□□□ -1.31
HDAC4P56524 MTHFD1P1-201ENST00000413059 2764 ntBASIC6.85□□□□□ -1.31
HDAC4P56524 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.85□□□□□ -1.31
HDAC4P56524 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC6.85□□□□□ -1.31
HDAC4P56524 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
HDAC4P56524 RBPJP6-201ENST00000411556 1431 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
HDAC4P56524 AC005332.9-201ENST00000620266 2921 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
HDAC4P56524 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
HDAC4P56524 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.84□□□□□ -1.31
HDAC4P56524 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.84□□□□□ -1.31
HDAC4P56524 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
HDAC4P56524 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC6.84□□□□□ -1.31
HDAC4P56524 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.31
HDAC4P56524 RNA5SP512-201ENST00000364550 120 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 SNORA7A-201ENST00000384765 139 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 UBTFL2-201ENST00000411859 1191 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 CYCSP52-201ENST00000422857 310 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC6.84□□□□□ -1.31
HDAC4P56524 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6.84□□□□□ -1.31
HDAC4P56524 AC013410.1-201ENST00000436223 1232 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 CCNJP1-201ENST00000450600 1149 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 RPL31P11-202ENST00000454082 372 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 RN7SL83P-201ENST00000468131 297 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 AC022415.1-202ENST00000486612 523 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 AC074386.1-206ENST00000487102 761 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 RPL5P14-201ENST00000494197 878 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC6.84□□□□□ -1.31
HDAC4P56524 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC6.84□□□□□ -1.31
HDAC4P56524 AC131935.1-201ENST00000524621 333 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC6.84□□□□□ -1.31
HDAC4P56524 RPL7AP69-201ENST00000595306 806 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.84□□□□□ -1.31
HDAC4P56524 AC015849.6-201ENST00000605454 474 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC6.84□□□□□ -1.31
HDAC4P56524 HTR1DP1-201ENST00000616500 888 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.84□□□□□ -1.31
HDAC4P56524 MIR6813-201ENST00000621638 56 ntBASIC6.84□□□□□ -1.31
HDAC4P56524 LINC00598-209ENST00000635966 1148 ntTSL 5 BASIC6.84□□□□□ -1.31
HDAC4P56524 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
HDAC4P56524 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC6.84□□□□□ -1.31
HDAC4P56524 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
HDAC4P56524 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
HDAC4P56524 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
HDAC4P56524 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
HDAC4P56524 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
HDAC4P56524 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
HDAC4P56524 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
HDAC4P56524 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.83□□□□□ -1.32
HDAC4P56524 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.83□□□□□ -1.32
HDAC4P56524 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC6.83□□□□□ -1.32
HDAC4P56524 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
HDAC4P56524 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
HDAC4P56524 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC6.83□□□□□ -1.32
HDAC4P56524 AC023245.2-201ENST00000530760 2978 ntBASIC6.83□□□□□ -1.32
HDAC4P56524 AC074141.1-201ENST00000588129 2995 ntBASIC6.83□□□□□ -1.32
HDAC4P56524 MAK-205ENST00000538030 2459 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
HDAC4P56524 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.83□□□□□ -1.32
HDAC4P56524 AP004289.1-201ENST00000436307 2205 ntBASIC6.83□□□□□ -1.32
HDAC4P56524 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.83□□□□□ -1.32
HDAC4P56524 HGF-205ENST00000423064 1990 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
HDAC4P56524 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
HDAC4P56524 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
HDAC4P56524 RNA5SP188-201ENST00000362916 129 ntBASIC6.83□□□□□ -1.32
HDAC4P56524 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC6.83□□□□□ -1.32
HDAC4P56524 OR2W4P-201ENST00000406496 926 ntBASIC6.83□□□□□ -1.32
HDAC4P56524 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC6.83□□□□□ -1.32
HDAC4P56524 VN1R53P-201ENST00000429536 957 ntBASIC6.83□□□□□ -1.32
HDAC4P56524 NFYAP1-201ENST00000431953 972 ntBASIC6.83□□□□□ -1.32
HDAC4P56524 AL022324.2-201ENST00000434827 780 ntBASIC6.83□□□□□ -1.32
HDAC4P56524 AC092106.2-201ENST00000436597 487 ntBASIC6.83□□□□□ -1.32
HDAC4P56524 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.83□□□□□ -1.32
HDAC4P56524 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC6.83□□□□□ -1.32
HDAC4P56524 YRDCP3-201ENST00000456507 480 ntBASIC6.83□□□□□ -1.32
HDAC4P56524 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC6.83□□□□□ -1.32
HDAC4P56524 AC073581.1-201ENST00000519036 575 ntBASIC6.83□□□□□ -1.32
HDAC4P56524 AP004607.6-201ENST00000525033 1202 ntBASIC6.83□□□□□ -1.32
HDAC4P56524 RPL41P2-201ENST00000544920 409 ntBASIC6.83□□□□□ -1.32
HDAC4P56524 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
HDAC4P56524 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC6.83□□□□□ -1.32
HDAC4P56524 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC6.83□□□□□ -1.32
HDAC4P56524 BMS1P14-201ENST00000615056 606 ntTSL 5 BASIC6.83□□□□□ -1.32
HDAC4P56524 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC6.83□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms