Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC6□□□□□ -1.45
HOXD4P09016 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC6□□□□□ -1.45
HOXD4P09016 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC6□□□□□ -1.45
HOXD4P09016 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HOXD4P09016 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC6□□□□□ -1.45
HOXD4P09016 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HOXD4P09016 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HOXD4P09016 RNA5SP333-201ENST00000363466 118 ntBASIC6□□□□□ -1.45
HOXD4P09016 SNORA38B-201ENST00000363524 131 ntBASIC6□□□□□ -1.45
HOXD4P09016 RNA5SP334-201ENST00000364825 118 ntBASIC6□□□□□ -1.45
HOXD4P09016 MRPS6P2-201ENST00000381143 370 ntBASIC6□□□□□ -1.45
HOXD4P09016 PSMA6P1-201ENST00000400275 741 ntBASIC6□□□□□ -1.45
HOXD4P09016 RN7SKP271-201ENST00000410528 320 ntBASIC6□□□□□ -1.45
HOXD4P09016 RANP6-201ENST00000413691 644 ntBASIC6□□□□□ -1.45
HOXD4P09016 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6□□□□□ -1.45
HOXD4P09016 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC6□□□□□ -1.45
HOXD4P09016 AL354893.1-201ENST00000433735 348 ntBASIC6□□□□□ -1.45
HOXD4P09016 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC6□□□□□ -1.45
HOXD4P09016 AC144530.1-201ENST00000452862 555 ntBASIC6□□□□□ -1.45
HOXD4P09016 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC6□□□□□ -1.45
HOXD4P09016 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
HOXD4P09016 CR383656.1-201ENST00000484916 377 ntBASIC6□□□□□ -1.45
HOXD4P09016 RPL17P2-201ENST00000491913 451 ntBASIC6□□□□□ -1.45
HOXD4P09016 AC106822.1-201ENST00000502647 526 ntBASIC6□□□□□ -1.45
HOXD4P09016 MAST4-IT1-201ENST00000514241 658 ntBASIC6□□□□□ -1.45
HOXD4P09016 SNORA74.1-201ENST00000516320 180 ntBASIC6□□□□□ -1.45
HOXD4P09016 IGKV2-19-201ENST00000518132 283 ntBASIC6□□□□□ -1.45
HOXD4P09016 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC6□□□□□ -1.45
HOXD4P09016 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC6□□□□□ -1.45
HOXD4P09016 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6□□□□□ -1.45
HOXD4P09016 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC6□□□□□ -1.45
HOXD4P09016 AC026826.3-201ENST00000561747 158 ntBASIC6□□□□□ -1.45
HOXD4P09016 SYPL1P2-201ENST00000582878 727 ntBASIC6□□□□□ -1.45
HOXD4P09016 GTF2IP6-201ENST00000583143 541 ntBASIC6□□□□□ -1.45
HOXD4P09016 AL078623.1-201ENST00000602702 907 ntBASIC6□□□□□ -1.45
HOXD4P09016 AC093635.1-201ENST00000609028 555 ntBASIC6□□□□□ -1.45
HOXD4P09016 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC6□□□□□ -1.45
HOXD4P09016 AC097641.3-201ENST00000613523 464 ntBASIC6□□□□□ -1.45
HOXD4P09016 AC010333.3-201ENST00000615100 402 ntBASIC6□□□□□ -1.45
HOXD4P09016 Six3os1_4.1-201ENST00000615706 324 ntBASIC6□□□□□ -1.45
HOXD4P09016 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC6□□□□□ -1.45
HOXD4P09016 SNX18P10-201ENST00000625014 519 ntBASIC6□□□□□ -1.45
HOXD4P09016 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC6□□□□□ -1.45
HOXD4P09016 AC123769.1-201ENST00000530992 3192 ntBASIC6□□□□□ -1.45
HOXD4P09016 MAPK10-379ENST00000642013 1385 ntBASIC6□□□□□ -1.45
HOXD4P09016 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
HOXD4P09016 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HOXD4P09016 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC6□□□□□ -1.45
HOXD4P09016 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC6□□□□□ -1.45
HOXD4P09016 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
HOXD4P09016 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
HOXD4P09016 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6□□□□□ -1.45
HOXD4P09016 PSMC1P4-201ENST00000515236 1327 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
HOXD4P09016 BX284613.1-201ENST00000452221 1641 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC5.99□□□□□ -1.45
HOXD4P09016 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC5.99□□□□□ -1.45
HOXD4P09016 STAG3L4-201ENST00000352103 530 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 RN7SKP15-201ENST00000364742 309 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 RNA5SP485-201ENST00000365053 119 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 SMARCE1P6-201ENST00000398372 1216 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
HOXD4P09016 AL590635.1-201ENST00000406314 586 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 RN7SKP296-201ENST00000411185 341 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC5.99□□□□□ -1.45
HOXD4P09016 RPS7P12-201ENST00000422385 582 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC5.99□□□□□ -1.45
HOXD4P09016 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.99□□□□□ -1.45
HOXD4P09016 AC063943.2-201ENST00000495697 534 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.99□□□□□ -1.45
HOXD4P09016 OR52H2P-201ENST00000514607 902 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 AC005363.1-201ENST00000530779 351 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC5.99□□□□□ -1.45
HOXD4P09016 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC5.99□□□□□ -1.45
HOXD4P09016 RPL3P13-201ENST00000550415 216 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC5.99□□□□□ -1.45
HOXD4P09016 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC5.99□□□□□ -1.45
HOXD4P09016 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC5.99□□□□□ -1.45
HOXD4P09016 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC5.99□□□□□ -1.45
HOXD4P09016 AC010463.3-201ENST00000594077 500 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC5.99□□□□□ -1.45
HOXD4P09016 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.99□□□□□ -1.45
HOXD4P09016 OSTC-205ENST00000613215 876 ntTSL 2 BASIC5.99□□□□□ -1.45
HOXD4P09016 AC034229.6-201ENST00000623704 224 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 AC111152.1-202ENST00000635848 339 ntBASIC5.99□□□□□ -1.45
HOXD4P09016 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.99□□□□□ -1.45
HOXD4P09016 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
HOXD4P09016 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 127.1 ms