Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC022206.1-201ENST00000495947 347 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 MTND6P8-201ENST00000503471 522 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 AC131182.1-201ENST00000509184 657 ntTSL 3 BASIC6.76□□□□□ -1.33
PTPN9P43378 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC6.76□□□□□ -1.33
PTPN9P43378 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC6.76□□□□□ -1.33
PTPN9P43378 RPL3P13-201ENST00000550415 216 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC6.76□□□□□ -1.33
PTPN9P43378 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6.76□□□□□ -1.33
PTPN9P43378 SYPL1P2-201ENST00000582878 727 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 AL008582.1-201ENST00000609612 442 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 AC016590.3-201ENST00000611171 753 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
PTPN9P43378 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 MIR6085-201ENST00000618314 110 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 AC211486.4-201ENST00000621495 113 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 MIR6503-201ENST00000622884 86 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 AC068213.1-201ENST00000625124 226 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 AL132640.3-201ENST00000630473 177 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 AC135068.11-201ENST00000636378 921 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
PTPN9P43378 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC6.76□□□□□ -1.33
PTPN9P43378 SMG1P5-202ENST00000529428 4219 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 SMG1P2-201ENST00000566127 4221 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC6.76□□□□□ -1.33
PTPN9P43378 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
PTPN9P43378 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
PTPN9P43378 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.76□□□□□ -1.33
PTPN9P43378 AC105235.1-201ENST00000623208 1816 ntBASIC6.76□□□□□ -1.33
PTPN9P43378 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
PTPN9P43378 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC6.75□□□□□ -1.33
PTPN9P43378 AL591848.4-201ENST00000567832 3472 ntBASIC6.75□□□□□ -1.33
PTPN9P43378 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
PTPN9P43378 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
PTPN9P43378 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
PTPN9P43378 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.75□□□□□ -1.33
PTPN9P43378 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
PTPN9P43378 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.75□□□□□ -1.33
PTPN9P43378 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
PTPN9P43378 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
PTPN9P43378 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
PTPN9P43378 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC6.75□□□□□ -1.33
PTPN9P43378 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
PTPN9P43378 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC6.75□□□□□ -1.33
PTPN9P43378 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
PTPN9P43378 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.75□□□□□ -1.33
PTPN9P43378 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC6.75□□□□□ -1.33
PTPN9P43378 NPM1P23-201ENST00000440193 849 ntBASIC6.75□□□□□ -1.33
PTPN9P43378 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC6.75□□□□□ -1.33
PTPN9P43378 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC6.75□□□□□ -1.33
PTPN9P43378 AC018645.1-201ENST00000505003 109 ntBASIC6.75□□□□□ -1.33
PTPN9P43378 RNA5SP116-201ENST00000516132 98 ntBASIC6.75□□□□□ -1.33
PTPN9P43378 AL133399.1-201ENST00000527476 298 ntBASIC6.75□□□□□ -1.33
PTPN9P43378 AC020611.2-201ENST00000535594 671 ntTSL 3 BASIC6.75□□□□□ -1.33
PTPN9P43378 AC027667.1-201ENST00000545814 304 ntBASIC6.75□□□□□ -1.33
PTPN9P43378 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC6.75□□□□□ -1.33
PTPN9P43378 LINC02457-201ENST00000552992 596 ntTSL 4 BASIC6.75□□□□□ -1.33
PTPN9P43378 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC6.75□□□□□ -1.33
PTPN9P43378 AC133552.4-201ENST00000576103 676 ntBASIC6.75□□□□□ -1.33
PTPN9P43378 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC6.75□□□□□ -1.33
PTPN9P43378 AC091193.1-201ENST00000604640 448 ntBASIC6.75□□□□□ -1.33
PTPN9P43378 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC6.75□□□□□ -1.33
PTPN9P43378 LINC02495-203ENST00000636704 242 ntBASIC6.75□□□□□ -1.33
PTPN9P43378 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
PTPN9P43378 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
PTPN9P43378 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
PTPN9P43378 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC6.75□□□□□ -1.33
PTPN9P43378 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC6.75□□□□□ -1.33
PTPN9P43378 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.75□□□□□ -1.33
PTPN9P43378 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.75□□□□□ -1.33
PTPN9P43378 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.75□□□□□ -1.33
PTPN9P43378 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
PTPN9P43378 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC6.75□□□□□ -1.33
PTPN9P43378 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
PTPN9P43378 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.74□□□□□ -1.33
PTPN9P43378 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.74□□□□□ -1.33
PTPN9P43378 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.74□□□□□ -1.33
PTPN9P43378 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
PTPN9P43378 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
PTPN9P43378 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
PTPN9P43378 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
PTPN9P43378 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC6.74□□□□□ -1.33
PTPN9P43378 AL449283.1-201ENST00000602631 3403 ntBASIC6.74□□□□□ -1.33
PTPN9P43378 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.74□□□□□ -1.33
PTPN9P43378 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.74□□□□□ -1.33
PTPN9P43378 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
PTPN9P43378 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
PTPN9P43378 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
PTPN9P43378 RNA5SP85-201ENST00000365378 119 ntBASIC6.74□□□□□ -1.33
PTPN9P43378 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
PTPN9P43378 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
PTPN9P43378 RN7SKP221-201ENST00000410420 301 ntBASIC6.74□□□□□ -1.33
PTPN9P43378 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC6.74□□□□□ -1.33
PTPN9P43378 SCP2-207ENST00000435345 894 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
PTPN9P43378 AC128677.1-201ENST00000436016 442 ntBASIC6.74□□□□□ -1.33
PTPN9P43378 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC6.74□□□□□ -1.33
PTPN9P43378 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC6.74□□□□□ -1.33
PTPN9P43378 VN1R38P-201ENST00000450265 887 ntBASIC6.74□□□□□ -1.33
PTPN9P43378 RN7SL413P-201ENST00000482700 297 ntBASIC6.74□□□□□ -1.33
PTPN9P43378 AC074386.1-206ENST00000487102 761 ntBASIC6.74□□□□□ -1.33
PTPN9P43378 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms