Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC015818.6-201ENST00000584274 634 ntBASIC10.37□□□□□ -0.75
CUX1P39880 PPP1R12B-204ENST00000391959 15431 ntTSL 5 BASIC10.37□□□□□ -0.75
CUX1P39880 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
CUX1P39880 AC005839.1-201ENST00000624148 3213 ntBASIC10.37□□□□□ -0.75
CUX1P39880 CCDC190-202ENST00000367911 1395 ntAPPRIS P2 TSL 3 BASIC10.37□□□□□ -0.75
CUX1P39880 ASAH1-203ENST00000381733 2512 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CUX1P39880 AC012254.3-201ENST00000591183 2117 ntBASIC10.36□□□□□ -0.75
CUX1P39880 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CUX1P39880 ADGRG7-201ENST00000273352 3140 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CUX1P39880 GUCY1B2-204ENST00000531898 1979 ntBASIC10.36□□□□□ -0.75
CUX1P39880 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC10.36□□□□□ -0.75
CUX1P39880 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC10.36□□□□□ -0.75
CUX1P39880 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CUX1P39880 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CUX1P39880 AL391422.1-201ENST00000402155 436 ntBASIC10.36□□□□□ -0.75
CUX1P39880 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC10.36□□□□□ -0.75
CUX1P39880 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC10.36□□□□□ -0.75
CUX1P39880 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC10.36□□□□□ -0.75
CUX1P39880 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC10.36□□□□□ -0.75
CUX1P39880 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CUX1P39880 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC10.36□□□□□ -0.75
CUX1P39880 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC10.36□□□□□ -0.75
CUX1P39880 SDR42E1P1-201ENST00000611327 477 ntBASIC10.36□□□□□ -0.75
CUX1P39880 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
CUX1P39880 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
CUX1P39880 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
CUX1P39880 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC10.36□□□□□ -0.75
CUX1P39880 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CUX1P39880 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
CUX1P39880 NCAM2-202ENST00000400546 8135 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
CUX1P39880 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CUX1P39880 MUC21-201ENST00000376296 3651 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
CUX1P39880 AL161901.1-201ENST00000624954 3425 ntBASIC10.35□□□□□ -0.75
CUX1P39880 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC10.35□□□□□ -0.75
CUX1P39880 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CUX1P39880 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
CUX1P39880 AL050335.1-201ENST00000396909 869 ntBASIC10.35□□□□□ -0.75
CUX1P39880 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC10.35□□□□□ -0.75
CUX1P39880 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
CUX1P39880 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC10.35□□□□□ -0.75
CUX1P39880 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC10.35□□□□□ -0.75
CUX1P39880 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CUX1P39880 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC10.35□□□□□ -0.75
CUX1P39880 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC10.35□□□□□ -0.75
CUX1P39880 AP000662.1-201ENST00000530952 487 ntBASIC10.35□□□□□ -0.75
CUX1P39880 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC10.35□□□□□ -0.75
CUX1P39880 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC10.35□□□□□ -0.75
CUX1P39880 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CUX1P39880 NEPNP-201ENST00000404786 1371 ntBASIC10.35□□□□□ -0.75
CUX1P39880 AL080317.3-201ENST00000607434 4315 ntBASIC10.35□□□□□ -0.75
CUX1P39880 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CUX1P39880 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CUX1P39880 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CUX1P39880 ASB8-201ENST00000317697 2615 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CUX1P39880 AC027279.4-201ENST00000624371 2072 ntBASIC10.35□□□□□ -0.75
CUX1P39880 CRB1-202ENST00000367399 3885 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CUX1P39880 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CUX1P39880 CXCR2-201ENST00000318507 2879 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CUX1P39880 XIAP-201ENST00000355640 8584 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
CUX1P39880 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
CUX1P39880 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CUX1P39880 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
CUX1P39880 BMS1P17-202ENST00000416720 316 ntBASIC10.34□□□□□ -0.75
CUX1P39880 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC10.34□□□□□ -0.75
CUX1P39880 AC016027.4-201ENST00000450866 277 ntBASIC10.34□□□□□ -0.75
CUX1P39880 AC093166.4-201ENST00000457867 318 ntBASIC10.34□□□□□ -0.75
CUX1P39880 NENFP3-201ENST00000503735 313 ntBASIC10.34□□□□□ -0.75
CUX1P39880 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC10.34□□□□□ -0.75
CUX1P39880 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC10.34□□□□□ -0.75
CUX1P39880 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC10.34□□□□□ -0.75
CUX1P39880 IMMP1LP3-201ENST00000604197 224 ntBASIC10.34□□□□□ -0.75
CUX1P39880 AL589674.2-201ENST00000604304 337 ntBASIC10.34□□□□□ -0.75
CUX1P39880 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CUX1P39880 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CUX1P39880 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CUX1P39880 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC10.34□□□□□ -0.75
CUX1P39880 PTPRT-207ENST00000373201 12660 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
CUX1P39880 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC10.34□□□□□ -0.75
CUX1P39880 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC10.34□□□□□ -0.75
CUX1P39880 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
CUX1P39880 PTPRT-205ENST00000373193 12681 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CUX1P39880 Z83820.1-201ENST00000456978 1499 ntBASIC10.33□□□□□ -0.76
CUX1P39880 CREM-217ENST00000439705 2306 ntTSL 5 BASIC10.33□□□□□ -0.76
CUX1P39880 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC10.33□□□□□ -0.76
CUX1P39880 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CUX1P39880 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CUX1P39880 AL596448.1-201ENST00000415024 392 ntBASIC10.33□□□□□ -0.76
CUX1P39880 RN7SL727P-201ENST00000482164 296 ntBASIC10.33□□□□□ -0.76
CUX1P39880 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
CUX1P39880 IGKV2-18-201ENST00000522607 343 ntBASIC10.33□□□□□ -0.76
CUX1P39880 LRRC36-205ENST00000563189 2104 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
CUX1P39880 AC006924.1-201ENST00000610750 559 ntBASIC10.33□□□□□ -0.76
CUX1P39880 AC096861.1-201ENST00000616652 240 ntBASIC10.33□□□□□ -0.76
CUX1P39880 AL392046.2-202ENST00000635301 1113 ntTSL 5 BASIC10.33□□□□□ -0.76
CUX1P39880 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CUX1P39880 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC10.33□□□□□ -0.76
CUX1P39880 AC078880.4-201ENST00000617627 1749 ntBASIC10.33□□□□□ -0.76
CUX1P39880 BIN2P1-201ENST00000504996 1530 ntBASIC10.33□□□□□ -0.76
CUX1P39880 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
CUX1P39880 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC10.33□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms