Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC096571.1-201ENST00000325407 306 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
USP39Q53GS9 PIH1D3-201ENST00000336387 993 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
USP39Q53GS9 ODF3-202ENST00000342593 386 ntTSL 5 BASIC6.98□□□□□ -1.29
USP39Q53GS9 RNU1-65P-201ENST00000363919 148 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 RN7SKP107-201ENST00000364157 290 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 NRIR-201ENST00000366140 799 ntTSL 3 BASIC6.98□□□□□ -1.29
USP39Q53GS9 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
USP39Q53GS9 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
USP39Q53GS9 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC6.98□□□□□ -1.29
USP39Q53GS9 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
USP39Q53GS9 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC6.98□□□□□ -1.29
USP39Q53GS9 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC6.98□□□□□ -1.29
USP39Q53GS9 ZFAND6P1-201ENST00000434138 605 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
USP39Q53GS9 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC6.98□□□□□ -1.29
USP39Q53GS9 AKR1D1P1-201ENST00000457236 936 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 RN7SL654P-201ENST00000479178 292 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 RPL23AP8-201ENST00000479812 475 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC6.98□□□□□ -1.29
USP39Q53GS9 AC021146.5-201ENST00000503544 545 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC6.98□□□□□ -1.29
USP39Q53GS9 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC6.98□□□□□ -1.29
USP39Q53GS9 AC010442.1-201ENST00000515583 816 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC6.98□□□□□ -1.29
USP39Q53GS9 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC6.98□□□□□ -1.29
USP39Q53GS9 LINC01919-201ENST00000578610 568 ntTSL 5 BASIC6.98□□□□□ -1.29
USP39Q53GS9 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC6.98□□□□□ -1.29
USP39Q53GS9 ZNF92P3-201ENST00000596594 954 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 ZRANB2-AS2-215ENST00000596952 624 ntTSL 5 BASIC6.98□□□□□ -1.29
USP39Q53GS9 AC010615.3-201ENST00000597319 394 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 AC015802.5-201ENST00000607478 399 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 WBP1LP8-201ENST00000617401 327 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 AC010809.3-201ENST00000621310 641 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC6.98□□□□□ -1.29
USP39Q53GS9 OR4X2-201ENST00000624868 1025 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
USP39Q53GS9 AP003399.1-201ENST00000637534 361 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 AL596275.2-203ENST00000641951 371 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
USP39Q53GS9 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
USP39Q53GS9 ATP5BP1-201ENST00000411980 1574 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
USP39Q53GS9 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
USP39Q53GS9 GPX6-201ENST00000361902 1712 ntAPPRIS P2 TSL 1 (best) BASIC6.98□□□□□ -1.29
USP39Q53GS9 GPX6-204ENST00000612264 1709 ntAPPRIS ALT1 TSL 5 BASIC6.98□□□□□ -1.29
USP39Q53GS9 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.98□□□□□ -1.29
USP39Q53GS9 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
USP39Q53GS9 AP003486.1-201ENST00000525716 3994 ntBASIC6.98□□□□□ -1.29
USP39Q53GS9 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
USP39Q53GS9 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.98□□□□□ -1.29
USP39Q53GS9 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 SPATA31C2-201ENST00000324915 3777 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC6.97□□□□□ -1.29
USP39Q53GS9 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 AC010132.4-201ENST00000569883 1368 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC6.97□□□□□ -1.29
USP39Q53GS9 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC6.97□□□□□ -1.29
USP39Q53GS9 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 DHFRP5-201ENST00000406944 564 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC6.97□□□□□ -1.29
USP39Q53GS9 AL139158.1-201ENST00000424719 340 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 MORF4L1P7-201ENST00000426038 703 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC6.97□□□□□ -1.29
USP39Q53GS9 AC114973.1-201ENST00000429057 632 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 RPSAP32-201ENST00000432681 526 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 MTND2P22-201ENST00000444325 1033 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 Z83846.1-201ENST00000446798 265 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 AC092164.1-201ENST00000452212 726 ntTSL 2 BASIC6.97□□□□□ -1.29
USP39Q53GS9 AP000805.1-201ENST00000471604 784 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 RPS27P20-201ENST00000492051 246 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 AC105313.1-201ENST00000509121 353 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC6.97□□□□□ -1.29
USP39Q53GS9 AC093816.1-201ENST00000515076 913 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC6.97□□□□□ -1.29
USP39Q53GS9 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.97□□□□□ -1.29
USP39Q53GS9 AC007537.1-201ENST00000539347 327 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 GNG2-203ENST00000553432 577 ntTSL 4 BASIC6.97□□□□□ -1.29
USP39Q53GS9 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 RN7SL339P-201ENST00000580597 296 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC6.97□□□□□ -1.29
USP39Q53GS9 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC6.97□□□□□ -1.29
USP39Q53GS9 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC6.97□□□□□ -1.29
USP39Q53GS9 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC6.97□□□□□ -1.29
USP39Q53GS9 AP005212.3-201ENST00000619964 528 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 AC026422.1-201ENST00000623961 452 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC6.97□□□□□ -1.29
USP39Q53GS9 CASC19-274ENST00000642018 970 ntBASIC6.97□□□□□ -1.29
USP39Q53GS9 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC6.97□□□□□ -1.29
USP39Q53GS9 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC6.97□□□□□ -1.29
USP39Q53GS9 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.97□□□□□ -1.29
USP39Q53GS9 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
USP39Q53GS9 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC6.97□□□□□ -1.29
USP39Q53GS9 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.97□□□□□ -1.29
USP39Q53GS9 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms