Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC6.32□□□□□ -1.4
HOXC4P09017 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC6.32□□□□□ -1.4
HOXC4P09017 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC6.32□□□□□ -1.4
HOXC4P09017 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 AL136984.1-201ENST00000607611 1893 ntBASIC6.32□□□□□ -1.4
HOXC4P09017 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.32□□□□□ -1.4
HOXC4P09017 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
HOXC4P09017 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC6.32□□□□□ -1.4
HOXC4P09017 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
HOXC4P09017 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC4P09017 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC6.31□□□□□ -1.4
HOXC4P09017 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
HOXC4P09017 AC078880.4-201ENST00000617627 1749 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
HOXC4P09017 AP000547.3-204ENST00000588548 2523 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
HOXC4P09017 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC4P09017 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 FGG-201ENST00000336098 1659 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC4P09017 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
HOXC4P09017 RNA5SP279-201ENST00000365513 117 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC4P09017 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC4P09017 AC092865.3-201ENST00000425390 1026 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 RPSAP65-201ENST00000429660 595 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC4P09017 AC099796.1-201ENST00000433377 683 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC4P09017 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC4P09017 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC4P09017 SOCS5P1-201ENST00000440415 949 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 GTF2IP14-201ENST00000441415 586 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC4P09017 RPL5P7-201ENST00000444235 813 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 BCAP29-207ENST00000445771 1157 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC4P09017 HMGB1P7-201ENST00000450921 612 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 RN7SL254P-201ENST00000460609 284 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 AC104339.1-201ENST00000465478 348 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC6.31□□□□□ -1.4
HOXC4P09017 RPL37P23-201ENST00000492641 294 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 AC109466.1-215ENST00000519750 516 ntTSL 5 BASIC6.31□□□□□ -1.4
HOXC4P09017 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC6.31□□□□□ -1.4
HOXC4P09017 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC4P09017 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC6.31□□□□□ -1.4
HOXC4P09017 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.31□□□□□ -1.4
HOXC4P09017 OR7A11P-201ENST00000597719 953 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 PLEKHA3P1-201ENST00000598554 894 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 AC097467.4-201ENST00000605504 141 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC4P09017 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.31□□□□□ -1.4
HOXC4P09017 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.31□□□□□ -1.4
HOXC4P09017 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 AP003486.1-201ENST00000525716 3994 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
HOXC4P09017 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 MARK2P4-201ENST00000503381 2380 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 OR2J2-203ENST00000641417 2392 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
HOXC4P09017 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
HOXC4P09017 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
HOXC4P09017 OFD1P17-201ENST00000437639 3018 ntBASIC6.31□□□□□ -1.4
HOXC4P09017 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 AL592430.1-202ENST00000414383 1546 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXC4P09017 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.3□□□□□ -1.4
HOXC4P09017 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.3□□□□□ -1.4
HOXC4P09017 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXC4P09017 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
HOXC4P09017 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC6.3□□□□□ -1.4
HOXC4P09017 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC6.3□□□□□ -1.4
HOXC4P09017 IGLV3-4-201ENST00000432300 244 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC6.3□□□□□ -1.4
HOXC4P09017 FABP5P2-201ENST00000439042 408 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 AL645936.1-201ENST00000441979 518 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXC4P09017 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.3□□□□□ -1.4
HOXC4P09017 AL589740.1-201ENST00000457513 756 ntTSL 3 BASIC6.3□□□□□ -1.4
HOXC4P09017 RN7SL369P-201ENST00000477138 299 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 RN7SL326P-201ENST00000477493 296 ntBASIC6.3□□□□□ -1.4
HOXC4P09017 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms