Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RN7SL791P-201ENST00000467868 295 ntBASIC6.58□□□□□ -1.36
MSX2P35548 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 AC087672.1-201ENST00000479876 766 ntBASIC6.58□□□□□ -1.36
MSX2P35548 RN7SL561P-201ENST00000488553 281 ntBASIC6.58□□□□□ -1.36
MSX2P35548 AC109464.1-201ENST00000511091 819 ntBASIC6.58□□□□□ -1.36
MSX2P35548 ANKRD55-205ENST00000513241 626 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX2P35548 AC105345.2-201ENST00000515186 664 ntTSL 3 BASIC6.58□□□□□ -1.36
MSX2P35548 AC013546.1-201ENST00000523232 564 ntTSL 4 BASIC6.58□□□□□ -1.36
MSX2P35548 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC6.58□□□□□ -1.36
MSX2P35548 AC125611.1-201ENST00000549563 229 ntBASIC6.58□□□□□ -1.36
MSX2P35548 AC044860.3-201ENST00000559957 368 ntBASIC6.58□□□□□ -1.36
MSX2P35548 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX2P35548 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC6.58□□□□□ -1.36
MSX2P35548 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX2P35548 AC090699.1-201ENST00000586264 321 ntBASIC6.58□□□□□ -1.36
MSX2P35548 RPSAP66-201ENST00000592196 606 ntBASIC6.58□□□□□ -1.36
MSX2P35548 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC6.58□□□□□ -1.36
MSX2P35548 AC015726.1-201ENST00000602353 681 ntBASIC6.58□□□□□ -1.36
MSX2P35548 AC068802.1-201ENST00000603420 732 ntBASIC6.58□□□□□ -1.36
MSX2P35548 AC104117.5-201ENST00000606195 547 ntBASIC6.58□□□□□ -1.36
MSX2P35548 AC092954.1-201ENST00000609121 445 ntBASIC6.58□□□□□ -1.36
MSX2P35548 AC096586.1-201ENST00000610267 561 ntBASIC6.58□□□□□ -1.36
MSX2P35548 AC026951.2-201ENST00000613847 241 ntBASIC6.58□□□□□ -1.36
MSX2P35548 AC005790.1-201ENST00000619774 450 ntBASIC6.58□□□□□ -1.36
MSX2P35548 CCL4L2-216ENST00000620098 836 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
MSX2P35548 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC6.58□□□□□ -1.36
MSX2P35548 AL354702.2-202ENST00000641481 890 ntBASIC6.58□□□□□ -1.36
MSX2P35548 AC018717.1-201ENST00000457712 1505 ntBASIC6.58□□□□□ -1.36
MSX2P35548 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX2P35548 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC6.58□□□□□ -1.36
MSX2P35548 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.58□□□□□ -1.36
MSX2P35548 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 AL049634.1-201ENST00000453770 1720 ntBASIC6.58□□□□□ -1.36
MSX2P35548 LINC01990-201ENST00000609293 1487 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
MSX2P35548 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 NUP210L-202ENST00000368553 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
MSX2P35548 CD96-202ENST00000352690 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX2P35548 EEF1A1P15-201ENST00000395772 1408 ntBASIC6.58□□□□□ -1.36
MSX2P35548 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.58□□□□□ -1.36
MSX2P35548 HSPD1P14-201ENST00000432666 1618 ntBASIC6.58□□□□□ -1.36
MSX2P35548 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX2P35548 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX2P35548 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 RNF19BPY-201ENST00000458209 1550 ntBASIC6.57□□□□□ -1.36
MSX2P35548 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
MSX2P35548 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
MSX2P35548 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC6.57□□□□□ -1.36
MSX2P35548 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 NF1-214ENST00000490416 1329 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX2P35548 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 AC120338.1-201ENST00000625074 1541 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AC078880.4-201ENST00000617627 1749 ntBASIC6.57□□□□□ -1.36
MSX2P35548 TAS2R7-201ENST00000240687 1096 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
MSX2P35548 GZMA-201ENST00000274306 894 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 RPS7-201ENST00000304921 786 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 OR2M1P-201ENST00000318104 951 ntBASIC6.57□□□□□ -1.36
MSX2P35548 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
MSX2P35548 RNA5SP333-201ENST00000363466 118 ntBASIC6.57□□□□□ -1.36
MSX2P35548 RNU6-792P-201ENST00000363490 107 ntBASIC6.57□□□□□ -1.36
MSX2P35548 RNA5SP334-201ENST00000364825 118 ntBASIC6.57□□□□□ -1.36
MSX2P35548 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX2P35548 RN7SKP254-201ENST00000410685 310 ntBASIC6.57□□□□□ -1.36
MSX2P35548 OR51B3P-201ENST00000412287 913 ntBASIC6.57□□□□□ -1.36
MSX2P35548 TCEA1P2-201ENST00000420496 906 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AC012560.1-202ENST00000421324 535 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 BX119904.4-201ENST00000424402 301 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AC013262.1-201ENST00000426710 252 ntBASIC6.57□□□□□ -1.36
MSX2P35548 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
MSX2P35548 AL596268.1-201ENST00000427910 1048 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX2P35548 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 AL035246.1-201ENST00000433554 1255 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AL451136.1-201ENST00000435399 325 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AC073143.1-201ENST00000436316 395 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AC007790.1-201ENST00000439081 782 ntBASIC6.57□□□□□ -1.36
MSX2P35548 LYSMD1-202ENST00000440902 1003 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX2P35548 AC093581.1-204ENST00000442606 390 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX2P35548 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC6.57□□□□□ -1.36
MSX2P35548 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 LINC02024-202ENST00000493545 483 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 SSR3-208ENST00000496050 579 ntTSL 4 BASIC6.57□□□□□ -1.36
MSX2P35548 RN7SL104P-201ENST00000498686 293 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AC034206.1-201ENST00000509372 474 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 AC025176.1-201ENST00000510261 365 ntTSL 4 BASIC6.57□□□□□ -1.36
MSX2P35548 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 LINC02200-203ENST00000513687 541 ntTSL 3 BASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms