Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC7.81□□□□□ -1.16
COL5A3P25940 RN7SL269P-201ENST00000467795 305 ntBASIC7.81□□□□□ -1.16
COL5A3P25940 AC018607.1-201ENST00000518552 673 ntTSL 5 BASIC7.81□□□□□ -1.16
COL5A3P25940 AP000662.1-201ENST00000530952 487 ntBASIC7.81□□□□□ -1.16
COL5A3P25940 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC7.81□□□□□ -1.16
COL5A3P25940 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC7.81□□□□□ -1.16
COL5A3P25940 AC096861.1-201ENST00000616652 240 ntBASIC7.81□□□□□ -1.16
COL5A3P25940 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC7.8□□□□□ -1.16
COL5A3P25940 LARS-212ENST00000510191 3737 ntTSL 2 BASIC7.8□□□□□ -1.16
COL5A3P25940 TMCC3-203ENST00000551457 4361 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL5A3P25940 WDFY2-201ENST00000298125 9321 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL5A3P25940 SLC25A24-202ENST00000370041 3404 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL5A3P25940 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL5A3P25940 MYO1E-201ENST00000288235 8673 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL5A3P25940 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC7.8□□□□□ -1.16
COL5A3P25940 AC016705.2-202ENST00000559008 6878 ntTSL 3 BASIC7.8□□□□□ -1.16
COL5A3P25940 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL5A3P25940 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC7.8□□□□□ -1.16
COL5A3P25940 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC7.8□□□□□ -1.16
COL5A3P25940 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
COL5A3P25940 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL5A3P25940 NFX1-203ENST00000379540 4604 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL5A3P25940 MIR375-201ENST00000362103 64 ntBASIC7.8□□□□□ -1.16
COL5A3P25940 RNA5SP46-201ENST00000362370 120 ntBASIC7.8□□□□□ -1.16
COL5A3P25940 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
COL5A3P25940 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC7.8□□□□□ -1.16
COL5A3P25940 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC7.8□□□□□ -1.16
COL5A3P25940 GAS5-218ENST00000448718 565 ntTSL 2 BASIC7.8□□□□□ -1.16
COL5A3P25940 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL5A3P25940 AC097537.1-201ENST00000514864 1213 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL5A3P25940 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC7.8□□□□□ -1.16
COL5A3P25940 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC7.8□□□□□ -1.16
COL5A3P25940 RN7SL544P-201ENST00000617232 284 ntBASIC7.8□□□□□ -1.16
COL5A3P25940 RN7SL763P-201ENST00000620922 284 ntBASIC7.8□□□□□ -1.16
COL5A3P25940 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC7.8□□□□□ -1.16
COL5A3P25940 TSHZ2-205ENST00000626626 670 ntBASIC7.8□□□□□ -1.16
COL5A3P25940 HECTD4-202ENST00000377560 15759 ntAPPRIS P5 TSL 5 BASIC7.8□□□□□ -1.16
COL5A3P25940 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
COL5A3P25940 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL5A3P25940 AC004014.2-201ENST00000623718 5122 ntBASIC7.8□□□□□ -1.16
COL5A3P25940 CLCN5-204ENST00000376108 2660 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
COL5A3P25940 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC7.8□□□□□ -1.16
COL5A3P25940 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL5A3P25940 IL13RA2-202ENST00000371936 1498 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.16
COL5A3P25940 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL5A3P25940 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC7.79□□□□□ -1.16
COL5A3P25940 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
COL5A3P25940 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC7.79□□□□□ -1.16
COL5A3P25940 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
COL5A3P25940 MET-202ENST00000397752 6635 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL5A3P25940 AC015971.1-203ENST00000426549 1948 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
COL5A3P25940 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC7.79□□□□□ -1.16
COL5A3P25940 DIEXF-202ENST00000491415 8446 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL5A3P25940 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
COL5A3P25940 ERG-203ENST00000398905 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL5A3P25940 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC7.79□□□□□ -1.16
COL5A3P25940 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL5A3P25940 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
COL5A3P25940 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC7.79□□□□□ -1.16
COL5A3P25940 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC7.79□□□□□ -1.16
COL5A3P25940 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC7.79□□□□□ -1.16
COL5A3P25940 VN1R110P-201ENST00000438988 971 ntBASIC7.79□□□□□ -1.16
COL5A3P25940 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC7.79□□□□□ -1.16
COL5A3P25940 SUMO2P1-206ENST00000445436 284 ntBASIC7.79□□□□□ -1.16
COL5A3P25940 AC002486.2-201ENST00000447806 590 ntBASIC7.79□□□□□ -1.16
COL5A3P25940 AC093166.4-201ENST00000457867 318 ntBASIC7.79□□□□□ -1.16
COL5A3P25940 AL122020.1-201ENST00000472287 459 ntBASIC7.79□□□□□ -1.16
COL5A3P25940 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC7.79□□□□□ -1.16
COL5A3P25940 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC7.79□□□□□ -1.16
COL5A3P25940 TMEM97P2-201ENST00000517841 403 ntBASIC7.79□□□□□ -1.16
COL5A3P25940 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC7.79□□□□□ -1.16
COL5A3P25940 DPPA2P4-201ENST00000563717 878 ntBASIC7.79□□□□□ -1.16
COL5A3P25940 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC7.79□□□□□ -1.16
COL5A3P25940 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.16
COL5A3P25940 DPY19L4-201ENST00000414645 6197 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL5A3P25940 ZNF888-202ENST00000638862 4195 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.16
COL5A3P25940 PRDM2-203ENST00000343137 5797 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
COL5A3P25940 ASB8-201ENST00000317697 2615 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
COL5A3P25940 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
COL5A3P25940 NEPNP-201ENST00000404786 1371 ntBASIC7.79□□□□□ -1.16
COL5A3P25940 AC009120.2-204ENST00000621548 2032 ntBASIC7.79□□□□□ -1.16
COL5A3P25940 WDR19-201ENST00000399820 4520 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL5A3P25940 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL5A3P25940 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL5A3P25940 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
COL5A3P25940 AC002504.1-201ENST00000438281 691 ntBASIC7.78□□□□□ -1.16
COL5A3P25940 AC006499.3-201ENST00000506077 748 ntBASIC7.78□□□□□ -1.16
COL5A3P25940 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC7.78□□□□□ -1.16
COL5A3P25940 AC115837.1-201ENST00000517662 1001 ntBASIC7.78□□□□□ -1.16
COL5A3P25940 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC7.78□□□□□ -1.16
COL5A3P25940 AC004948.1-201ENST00000609858 672 ntBASIC7.78□□□□□ -1.16
COL5A3P25940 AL132640.3-201ENST00000630473 177 ntBASIC7.78□□□□□ -1.16
COL5A3P25940 CREM-217ENST00000439705 2306 ntTSL 5 BASIC7.78□□□□□ -1.16
COL5A3P25940 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL5A3P25940 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC7.78□□□□□ -1.16
COL5A3P25940 PBRM1-206ENST00000409114 5015 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL5A3P25940 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC7.78□□□□□ -1.16
COL5A3P25940 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL5A3P25940 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
COL5A3P25940 PIEZO2-201ENST00000302079 9356 ntTSL 5 BASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms