Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC8.16□□□□□ -1.1
HMGB1P09429 PFN2-209ENST00000481275 560 ntTSL 4 BASIC8.16□□□□□ -1.1
HMGB1P09429 AC025271.1-201ENST00000485045 429 ntBASIC8.16□□□□□ -1.1
HMGB1P09429 IGHV3-63-201ENST00000518422 341 ntBASIC8.16□□□□□ -1.1
HMGB1P09429 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC8.16□□□□□ -1.1
HMGB1P09429 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
HMGB1P09429 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC8.16□□□□□ -1.1
HMGB1P09429 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC8.16□□□□□ -1.1
HMGB1P09429 AC092375.1-201ENST00000550410 637 ntBASIC8.16□□□□□ -1.1
HMGB1P09429 VPS35P1-201ENST00000563400 1518 ntBASIC8.16□□□□□ -1.1
HMGB1P09429 SMG1P7-201ENST00000565246 2704 ntBASIC8.16□□□□□ -1.1
HMGB1P09429 AC018558.5-201ENST00000565840 952 ntBASIC8.16□□□□□ -1.1
HMGB1P09429 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC8.16□□□□□ -1.1
HMGB1P09429 AC011193.2-201ENST00000582638 367 ntBASIC8.16□□□□□ -1.1
HMGB1P09429 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC8.16□□□□□ -1.1
HMGB1P09429 MIMT1-201ENST00000597105 1050 ntBASIC8.16□□□□□ -1.1
HMGB1P09429 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC8.16□□□□□ -1.1
HMGB1P09429 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC8.16□□□□□ -1.1
HMGB1P09429 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC8.16□□□□□ -1.1
HMGB1P09429 AC012629.3-201ENST00000623397 328 ntBASIC8.16□□□□□ -1.1
HMGB1P09429 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
HMGB1P09429 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
HMGB1P09429 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC8.16□□□□□ -1.1
HMGB1P09429 SPATA31B1P-201ENST00000434692 4016 ntBASIC8.16□□□□□ -1.1
HMGB1P09429 NACA-203ENST00000454682 6629 ntTSL 5 BASIC8.16□□□□□ -1.1
HMGB1P09429 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC8.16□□□□□ -1.1
HMGB1P09429 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
HMGB1P09429 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
HMGB1P09429 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
HMGB1P09429 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC8.15□□□□□ -1.1
HMGB1P09429 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC8.15□□□□□ -1.1
HMGB1P09429 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
HMGB1P09429 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
HMGB1P09429 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
HMGB1P09429 AC110792.3-201ENST00000595906 1614 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 PYHIN1-204ENST00000392252 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC8.15□□□□□ -1.1
HMGB1P09429 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC8.15□□□□□ -1.1
HMGB1P09429 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC8.15□□□□□ -1.1
HMGB1P09429 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC8.15□□□□□ -1.1
HMGB1P09429 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
HMGB1P09429 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC8.15□□□□□ -1.1
HMGB1P09429 AC093227.1-201ENST00000588040 1360 ntTSL 3 BASIC8.15□□□□□ -1.1
HMGB1P09429 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
HMGB1P09429 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
HMGB1P09429 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
HMGB1P09429 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC8.15□□□□□ -1.1
HMGB1P09429 SNORA11D-201ENST00000408548 128 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 SNORA11E-201ENST00000408778 128 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 AL713923.1-201ENST00000414071 378 ntTSL 5 BASIC8.15□□□□□ -1.1
HMGB1P09429 BTF3P9-201ENST00000418784 283 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 OR52U1P-201ENST00000439752 923 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 AC011742.2-201ENST00000443818 352 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 AL627224.1-201ENST00000448334 444 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 RPS4XP19-201ENST00000460237 736 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 AC021205.1-201ENST00000468797 348 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 AC083806.1-201ENST00000468934 316 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 TUBBP11-201ENST00000472255 252 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 AC090543.1-201ENST00000492168 485 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC8.15□□□□□ -1.1
HMGB1P09429 AC107952.1-201ENST00000524200 376 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 AP001994.1-201ENST00000527539 826 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC8.15□□□□□ -1.1
HMGB1P09429 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC8.15□□□□□ -1.1
HMGB1P09429 NF1P12-201ENST00000549593 583 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 RN7SL199P-201ENST00000578752 281 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 RN7SL656P-201ENST00000579044 281 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 RN7SL404P-201ENST00000582421 281 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC8.15□□□□□ -1.1
HMGB1P09429 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC8.15□□□□□ -1.1
HMGB1P09429 AC020914.7-201ENST00000594477 545 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 RPS4XP16-202ENST00000595905 807 ntTSL 5 BASIC8.15□□□□□ -1.1
HMGB1P09429 AC073539.3-201ENST00000601905 386 ntTSL 3 BASIC8.15□□□□□ -1.1
HMGB1P09429 AL031429.2-201ENST00000602605 649 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 AL365259.1-201ENST00000606334 509 ntTSL 5 BASIC8.15□□□□□ -1.1
HMGB1P09429 AC243919.1-201ENST00000613086 785 ntTSL 5 BASIC8.15□□□□□ -1.1
HMGB1P09429 AC008626.2-201ENST00000624425 248 ntBASIC8.15□□□□□ -1.1
HMGB1P09429 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC8.15□□□□□ -1.1
HMGB1P09429 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC8.15□□□□□ -1.1
HMGB1P09429 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC8.15□□□□□ -1.1
HMGB1P09429 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC8.15□□□□□ -1.1
HMGB1P09429 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC8.15□□□□□ -1.11
HMGB1P09429 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
HMGB1P09429 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC8.15□□□□□ -1.11
HMGB1P09429 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC8.15□□□□□ -1.11
HMGB1P09429 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC8.15□□□□□ -1.11
HMGB1P09429 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC8.15□□□□□ -1.11
HMGB1P09429 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC8.15□□□□□ -1.11
HMGB1P09429 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC8.15□□□□□ -1.11
HMGB1P09429 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
HMGB1P09429 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC8.15□□□□□ -1.11
HMGB1P09429 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
HMGB1P09429 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
HMGB1P09429 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC8.14□□□□□ -1.11
HMGB1P09429 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC8.14□□□□□ -1.11
HMGB1P09429 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC8.14□□□□□ -1.11
HMGB1P09429 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
HMGB1P09429 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC8.14□□□□□ -1.11
HMGB1P09429 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC8.14□□□□□ -1.11
HMGB1P09429 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC8.14□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 438.5 ms