Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
HOXD4P09016 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
HOXD4P09016 AP000866.1-202ENST00000529392 2792 ntTSL 2 BASIC6.06□□□□□ -1.44
HOXD4P09016 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC6.06□□□□□ -1.44
HOXD4P09016 AC104837.1-201ENST00000444644 1587 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.06□□□□□ -1.44
HOXD4P09016 AP002800.1-201ENST00000624982 2225 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.06□□□□□ -1.44
HOXD4P09016 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
HOXD4P09016 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 RNU1-65P-201ENST00000363919 148 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 RNA5SP140-201ENST00000364524 92 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 RNA5SP85-201ENST00000365378 119 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 RNU4ATAC2P-201ENST00000408674 126 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 MIR1282-201ENST00000408865 101 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 EMX2OS-201ENST00000412075 1025 ntTSL 2 BASIC6.06□□□□□ -1.44
HOXD4P09016 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.06□□□□□ -1.44
HOXD4P09016 GPN3P1-201ENST00000423883 535 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 DUTP4-201ENST00000424782 475 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
HOXD4P09016 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.06□□□□□ -1.44
HOXD4P09016 GTF2A1-202ENST00000434192 1199 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6.06□□□□□ -1.44
HOXD4P09016 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 RPL7AP23-201ENST00000482625 776 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 PFN1P8-201ENST00000497012 543 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC6.06□□□□□ -1.44
HOXD4P09016 AC091849.1-201ENST00000509920 121 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC6.06□□□□□ -1.44
HOXD4P09016 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.06□□□□□ -1.44
HOXD4P09016 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC6.06□□□□□ -1.44
HOXD4P09016 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC6.06□□□□□ -1.44
HOXD4P09016 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC6.06□□□□□ -1.44
HOXD4P09016 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC6.06□□□□□ -1.44
HOXD4P09016 OR11H12-201ENST00000550708 1085 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
HOXD4P09016 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.06□□□□□ -1.44
HOXD4P09016 PPIAP14-201ENST00000577627 496 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 RN7SL230P-201ENST00000580835 303 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC6.06□□□□□ -1.44
HOXD4P09016 AC092067.1-201ENST00000592929 488 ntTSL 3 BASIC6.06□□□□□ -1.44
HOXD4P09016 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.06□□□□□ -1.44
HOXD4P09016 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC6.06□□□□□ -1.44
HOXD4P09016 WBP1LP12-201ENST00000604449 331 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC6.06□□□□□ -1.44
HOXD4P09016 AC068726.1-201ENST00000610993 341 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.06□□□□□ -1.44
HOXD4P09016 uc_338.29-201ENST00000615099 168 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC6.06□□□□□ -1.44
HOXD4P09016 AL035425.4-201ENST00000624509 1063 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC6.06□□□□□ -1.44
HOXD4P09016 PSMD10P2-202ENST00000626135 819 ntTSL 5 BASIC6.06□□□□□ -1.44
HOXD4P09016 AC063952.1-203ENST00000634410 658 ntBASIC6.06□□□□□ -1.44
HOXD4P09016 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC6.06□□□□□ -1.44
HOXD4P09016 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC6.06□□□□□ -1.44
HOXD4P09016 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC6.06□□□□□ -1.44
HOXD4P09016 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.06□□□□□ -1.44
HOXD4P09016 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC6.06□□□□□ -1.44
HOXD4P09016 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
HOXD4P09016 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 PLCH1-206ENST00000494598 3525 ntTSL 5 BASIC6.06□□□□□ -1.44
HOXD4P09016 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HOXD4P09016 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
HOXD4P09016 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
HOXD4P09016 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
HOXD4P09016 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.05□□□□□ -1.44
HOXD4P09016 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HOXD4P09016 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HOXD4P09016 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HOXD4P09016 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.05□□□□□ -1.44
HOXD4P09016 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
HOXD4P09016 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
HOXD4P09016 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
HOXD4P09016 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
HOXD4P09016 MIR323B-201ENST00000385269 82 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 NME1P1-201ENST00000420914 382 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 AL445218.1-202ENST00000427695 845 ntTSL 3 BASIC6.05□□□□□ -1.44
HOXD4P09016 RPL34P27-201ENST00000428810 349 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC6.05□□□□□ -1.44
HOXD4P09016 RPSAP32-201ENST00000432681 526 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 DNAJC19P5-201ENST00000443295 316 ntBASIC6.05□□□□□ -1.44
HOXD4P09016 AC004870.2-201ENST00000445615 831 ntTSL 3 BASIC6.05□□□□□ -1.44
HOXD4P09016 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC6.05□□□□□ -1.44
HOXD4P09016 AC093166.3-201ENST00000448785 303 ntBASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms