Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC007342.9-201ENST00000623877 1385 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC092724.1-201ENST00000624623 3397 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NKX3-1Q99801 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NKX3-1Q99801 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
NKX3-1Q99801 ZNF806-201ENST00000438300 1774 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 API5P1-201ENST00000424316 1510 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 SEC61G-201ENST00000352861 462 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NKX3-1Q99801 RNA5SP114-201ENST00000363780 113 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AL359694.1-201ENST00000403247 604 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 TIMD4-203ENST00000407087 1145 ntAPPRIS ALT2 TSL 2 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 RN7SKP268-201ENST00000411107 316 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 RNA5SP115-201ENST00000411160 107 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 AL353626.3-201ENST00000413399 657 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 SPRY4-AS1-201ENST00000414314 521 ntTSL 3 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AL158212.1-201ENST00000428766 315 ntTSL 5 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 NFYAP1-201ENST00000431953 972 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC092824.1-201ENST00000483524 576 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 AL135933.1-201ENST00000498657 802 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 RBMS2P1-201ENST00000525031 1226 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 KCTD9P4-201ENST00000526766 1166 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC068205.2-201ENST00000532864 771 ntTSL 5 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC069240.2-201ENST00000550242 609 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC026458.1-201ENST00000564330 438 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AL590032.1-201ENST00000604920 252 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC097467.4-201ENST00000605504 141 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC022960.2-201ENST00000616300 666 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC006328.2-201ENST00000623198 397 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC012005.2-201ENST00000624333 397 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AC023245.2-201ENST00000530760 2978 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
NKX3-1Q99801 AL512353.3-201ENST00000417517 1326 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 AL117378.2-201ENST00000622916 1337 ntBASIC5.71□□□□□ -1.5
NKX3-1Q99801 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
NKX3-1Q99801 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NKX3-1Q99801 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NKX3-1Q99801 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC5.71□□□□□ -1.5
NKX3-1Q99801 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AL731556.1-201ENST00000394628 3711 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 MEF2C-225ENST00000625585 3467 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 FTO-215ENST00000636491 1676 ntTSL 5 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 MRPL47-201ENST00000259038 1126 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 PPIAP26-201ENST00000377951 522 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 RNU1-46P-201ENST00000384425 164 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 UGT1A6-203ENST00000406651 785 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AC073115.2-201ENST00000416708 555 ntTSL 4 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 VN1R3-201ENST00000418822 919 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 GAPDHP57-201ENST00000424400 585 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 PUDPP2-201ENST00000431423 643 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 AC114402.2-201ENST00000432760 643 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 SCP2-207ENST00000435345 894 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AC003035.2-201ENST00000448948 696 ntTSL 3 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 AC009244.1-201ENST00000450566 258 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC5.7□□□□□ -1.5
NKX3-1Q99801 SRP68P2-201ENST00000456184 254 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 AL133480.2-201ENST00000456723 487 ntBASIC5.7□□□□□ -1.5
NKX3-1Q99801 TFP1-201ENST00000460564 572 ntTSL 4 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms