Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.4□□□□□ -1.38
SHMT2P34897 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC6.4□□□□□ -1.38
SHMT2P34897 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.4□□□□□ -1.38
SHMT2P34897 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC6.4□□□□□ -1.38
SHMT2P34897 CCNJP1-201ENST00000450600 1149 ntBASIC6.4□□□□□ -1.38
SHMT2P34897 RPL24-206ENST00000495401 478 ntTSL 2 BASIC6.4□□□□□ -1.38
SHMT2P34897 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.4□□□□□ -1.38
SHMT2P34897 AC093870.1-201ENST00000506837 213 ntBASIC6.4□□□□□ -1.38
SHMT2P34897 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.4□□□□□ -1.38
SHMT2P34897 RNA5SP116-201ENST00000516132 98 ntBASIC6.4□□□□□ -1.38
SHMT2P34897 AC008429.2-201ENST00000523057 864 ntBASIC6.4□□□□□ -1.38
SHMT2P34897 MIR212-201ENST00000586026 110 ntBASIC6.4□□□□□ -1.38
SHMT2P34897 AL356986.1-201ENST00000604085 341 ntBASIC6.4□□□□□ -1.38
SHMT2P34897 AC025171.4-201ENST00000607250 1047 ntBASIC6.4□□□□□ -1.38
SHMT2P34897 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.4□□□□□ -1.38
SHMT2P34897 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC6.4□□□□□ -1.38
SHMT2P34897 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.4□□□□□ -1.38
SHMT2P34897 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.4□□□□□ -1.38
SHMT2P34897 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SHMT2P34897 CRYZ-201ENST00000340866 1888 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SHMT2P34897 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
SHMT2P34897 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SHMT2P34897 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SHMT2P34897 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
SHMT2P34897 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SHMT2P34897 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
SHMT2P34897 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SHMT2P34897 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
SHMT2P34897 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.39□□□□□ -1.39
SHMT2P34897 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.39□□□□□ -1.39
SHMT2P34897 DEFB1-201ENST00000297439 478 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SHMT2P34897 OR7A2P-201ENST00000304105 930 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 RPL12P23-201ENST00000405880 490 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 RPS21P8-201ENST00000413365 247 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC6.39□□□□□ -1.39
SHMT2P34897 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SHMT2P34897 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC6.39□□□□□ -1.39
SHMT2P34897 AC115223.1-201ENST00000466377 870 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 RN7SL413P-201ENST00000482700 297 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 H3F3AP3-201ENST00000497682 407 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 AC083906.1-201ENST00000509298 406 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 NACAP5-201ENST00000509863 636 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
SHMT2P34897 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC6.39□□□□□ -1.39
SHMT2P34897 AC010809.1-201ENST00000560268 562 ntTSL 3 BASIC6.39□□□□□ -1.39
SHMT2P34897 CNEP1R1-204ENST00000562576 656 ntTSL 5 BASIC6.39□□□□□ -1.39
SHMT2P34897 AC092718.4-201ENST00000566639 716 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 RN7SL208P-201ENST00000577964 296 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 AL359704.2-201ENST00000604335 521 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 AL445647.2-201ENST00000615170 130 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 U1.41-201ENST00000617626 165 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 AC244100.4-201ENST00000617747 388 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 AC005393.1-201ENST00000617916 584 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 MIR6813-201ENST00000621638 56 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 AC007603.3-201ENST00000636915 979 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SHMT2P34897 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
SHMT2P34897 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
SHMT2P34897 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.39□□□□□ -1.39
SHMT2P34897 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.39□□□□□ -1.39
SHMT2P34897 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC6.39□□□□□ -1.39
SHMT2P34897 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SHMT2P34897 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC6.39□□□□□ -1.39
SHMT2P34897 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC6.39□□□□□ -1.39
SHMT2P34897 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
SHMT2P34897 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
SHMT2P34897 AC087392.3-202ENST00000358446 1754 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 GDA-209ENST00000545168 5362 ntTSL 2 BASIC6.39□□□□□ -1.39
SHMT2P34897 GBP1-201ENST00000370473 3035 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SHMT2P34897 AC025809.2-201ENST00000625085 1802 ntBASIC6.39□□□□□ -1.39
SHMT2P34897 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
SHMT2P34897 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SHMT2P34897 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SHMT2P34897 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SHMT2P34897 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SHMT2P34897 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.38□□□□□ -1.39
SHMT2P34897 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SHMT2P34897 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SHMT2P34897 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SHMT2P34897 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SHMT2P34897 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC6.38□□□□□ -1.39
SHMT2P34897 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC6.38□□□□□ -1.39
SHMT2P34897 VIM2P-201ENST00000402383 1294 ntBASIC6.38□□□□□ -1.39
SHMT2P34897 AC017035.1-201ENST00000411999 1115 ntBASIC6.38□□□□□ -1.39
SHMT2P34897 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SHMT2P34897 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC6.38□□□□□ -1.39
SHMT2P34897 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
SHMT2P34897 AC004890.1-201ENST00000461005 181 ntBASIC6.38□□□□□ -1.39
SHMT2P34897 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC6.38□□□□□ -1.39
SHMT2P34897 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC6.38□□□□□ -1.39
SHMT2P34897 SCARNA5-201ENST00000516201 276 ntBASIC6.38□□□□□ -1.39
SHMT2P34897 TBCA-209ENST00000522370 435 ntTSL 3 BASIC6.38□□□□□ -1.39
SHMT2P34897 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC6.38□□□□□ -1.39
SHMT2P34897 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC6.38□□□□□ -1.39
SHMT2P34897 AC037479.1-201ENST00000558361 625 ntBASIC6.38□□□□□ -1.39
SHMT2P34897 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.38□□□□□ -1.39
SHMT2P34897 MIR3157-201ENST00000578688 85 ntBASIC6.38□□□□□ -1.39
SHMT2P34897 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC6.38□□□□□ -1.39
SHMT2P34897 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC6.38□□□□□ -1.39
SHMT2P34897 AL008582.1-201ENST00000609612 442 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms