Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 UBTFL2-201ENST00000411859 1191 ntBASIC6.17□□□□□ -1.42
SOX3P41225 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.17□□□□□ -1.42
SOX3P41225 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 RPS7P12-201ENST00000422385 582 ntBASIC6.17□□□□□ -1.42
SOX3P41225 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC6.17□□□□□ -1.42
SOX3P41225 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC6.17□□□□□ -1.42
SOX3P41225 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC6.17□□□□□ -1.42
SOX3P41225 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.17□□□□□ -1.42
SOX3P41225 AC114812.2-201ENST00000439336 663 ntTSL 2 BASIC6.17□□□□□ -1.42
SOX3P41225 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.17□□□□□ -1.42
SOX3P41225 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC6.17□□□□□ -1.42
SOX3P41225 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.17□□□□□ -1.42
SOX3P41225 RN7SL393P-201ENST00000463588 296 ntBASIC6.17□□□□□ -1.42
SOX3P41225 AL390198.2-201ENST00000510553 222 ntBASIC6.17□□□□□ -1.42
SOX3P41225 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC6.17□□□□□ -1.42
SOX3P41225 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC6.17□□□□□ -1.42
SOX3P41225 MIR4732-201ENST00000581873 76 ntBASIC6.17□□□□□ -1.42
SOX3P41225 MIR212-201ENST00000586026 110 ntBASIC6.17□□□□□ -1.42
SOX3P41225 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC6.17□□□□□ -1.42
SOX3P41225 OR7A11P-201ENST00000597719 953 ntBASIC6.17□□□□□ -1.42
SOX3P41225 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC6.17□□□□□ -1.42
SOX3P41225 AL008582.1-201ENST00000609612 442 ntBASIC6.17□□□□□ -1.42
SOX3P41225 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC6.17□□□□□ -1.42
SOX3P41225 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC6.17□□□□□ -1.42
SOX3P41225 RAB28P4-201ENST00000622233 665 ntBASIC6.17□□□□□ -1.42
SOX3P41225 AC068213.1-201ENST00000625124 226 ntBASIC6.17□□□□□ -1.42
SOX3P41225 ZNF720-202ENST00000398696 1339 ntTSL 4 BASIC6.17□□□□□ -1.42
SOX3P41225 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
SOX3P41225 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.17□□□□□ -1.42
SOX3P41225 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
SOX3P41225 AC011504.1-201ENST00000623331 4103 ntBASIC6.17□□□□□ -1.42
SOX3P41225 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.17□□□□□ -1.42
SOX3P41225 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SOX3P41225 TMED2-203ENST00000509052 1975 ntTSL 2 BASIC6.17□□□□□ -1.42
SOX3P41225 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
SOX3P41225 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX3P41225 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
SOX3P41225 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
SOX3P41225 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 DMD-222ENST00000474231 5209 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX3P41225 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX3P41225 RPL24P4-201ENST00000326586 421 ntBASIC6.16□□□□□ -1.42
SOX3P41225 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 SNORA38B-201ENST00000363524 131 ntBASIC6.16□□□□□ -1.42
SOX3P41225 MIR191-201ENST00000384873 92 ntBASIC6.16□□□□□ -1.42
SOX3P41225 RN7SKP188-201ENST00000410789 317 ntBASIC6.16□□□□□ -1.42
SOX3P41225 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX3P41225 AL138767.3-201ENST00000438082 495 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX3P41225 AC092601.1-201ENST00000444526 383 ntBASIC6.16□□□□□ -1.42
SOX3P41225 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX3P41225 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.16□□□□□ -1.42
SOX3P41225 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX3P41225 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
SOX3P41225 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX3P41225 RN7SL561P-201ENST00000488553 281 ntBASIC6.16□□□□□ -1.42
SOX3P41225 RPL9P15-201ENST00000491096 532 ntBASIC6.16□□□□□ -1.42
SOX3P41225 MTND6P8-201ENST00000503471 522 ntBASIC6.16□□□□□ -1.42
SOX3P41225 AC092349.1-201ENST00000504903 310 ntBASIC6.16□□□□□ -1.42
SOX3P41225 AC138517.1-201ENST00000515724 568 ntBASIC6.16□□□□□ -1.42
SOX3P41225 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 AC156455.1-201ENST00000538790 851 ntTSL 2 BASIC6.16□□□□□ -1.42
SOX3P41225 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC6.16□□□□□ -1.42
SOX3P41225 DPPA3P2-201ENST00000553589 478 ntBASIC6.16□□□□□ -1.42
SOX3P41225 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX3P41225 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX3P41225 RN7SL270P-201ENST00000579643 281 ntBASIC6.16□□□□□ -1.42
SOX3P41225 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC6.16□□□□□ -1.42
SOX3P41225 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX3P41225 AC092902.3-201ENST00000610060 373 ntTSL 3 BASIC6.16□□□□□ -1.42
SOX3P41225 AC015819.1-201ENST00000613588 663 ntBASIC6.16□□□□□ -1.42
SOX3P41225 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC6.16□□□□□ -1.42
SOX3P41225 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC6.16□□□□□ -1.42
SOX3P41225 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX3P41225 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 PARP4P1-201ENST00000435945 2337 ntBASIC6.16□□□□□ -1.42
SOX3P41225 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC6.16□□□□□ -1.42
SOX3P41225 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.16□□□□□ -1.42
SOX3P41225 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 OSBPL6-207ENST00000409631 3273 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SOX3P41225 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SOX3P41225 AC020658.2-201ENST00000559030 4020 ntBASIC6.15□□□□□ -1.42
SOX3P41225 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SOX3P41225 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC6.15□□□□□ -1.42
SOX3P41225 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.15□□□□□ -1.42
SOX3P41225 AC007012.2-201ENST00000623206 1676 ntBASIC6.15□□□□□ -1.42
SOX3P41225 IFNK-201ENST00000276943 1140 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms