Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 TEX41-271ENST00000628213 993 ntTSL 5 BASIC7.06□□□□□ -1.28
USP39Q53GS9 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC7.06□□□□□ -1.28
USP39Q53GS9 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 CTAGE11P-201ENST00000451540 2353 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC7.06□□□□□ -1.28
USP39Q53GS9 AC092701.1-201ENST00000623627 1551 ntBASIC7.06□□□□□ -1.28
USP39Q53GS9 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC7.06□□□□□ -1.28
USP39Q53GS9 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC7.06□□□□□ -1.28
USP39Q53GS9 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC7.06□□□□□ -1.28
USP39Q53GS9 KLHL2-202ENST00000421009 2452 ntTSL 5 BASIC7.06□□□□□ -1.28
USP39Q53GS9 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 COPS4-209ENST00000511653 1695 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
USP39Q53GS9 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC7.05□□□□□ -1.28
USP39Q53GS9 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
USP39Q53GS9 SEPT7P7-201ENST00000420492 1301 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 MFSD8-213ENST00000641134 1327 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC7.05□□□□□ -1.28
USP39Q53GS9 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 PBLD-204ENST00000358769 2587 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
USP39Q53GS9 LINC02324-201ENST00000531609 1442 ntTSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
USP39Q53GS9 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC010894.1-201ENST00000313760 361 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 RN7SKP74-201ENST00000362849 309 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 RN7SKP171-201ENST00000364417 303 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 AL137058.2-203ENST00000398039 825 ntTSL 3 BASIC7.05□□□□□ -1.28
USP39Q53GS9 CNPY1-202ENST00000406197 560 ntTSL 5 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AL133268.2-201ENST00000416595 430 ntTSL 3 BASIC7.05□□□□□ -1.28
USP39Q53GS9 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC7.05□□□□□ -1.28
USP39Q53GS9 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 USP12PY-201ENST00000427677 1064 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 AC018804.1-201ENST00000430381 618 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC7.05□□□□□ -1.28
USP39Q53GS9 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC117395.2-201ENST00000463122 1128 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 AC066616.1-201ENST00000486795 413 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 RN7SL37P-201ENST00000490461 307 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 AC122718.2-201ENST00000505325 591 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 B4GALNT2P1-201ENST00000508857 307 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 C1GALT1P2-201ENST00000510813 1104 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 AC119751.5-201ENST00000514077 770 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 TPT1-AS1-207ENST00000520310 563 ntTSL 5 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AF117829.1-205ENST00000524190 383 ntTSL 3 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC7.05□□□□□ -1.28
USP39Q53GS9 OR4A41P-201ENST00000533053 928 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC090888.3-201ENST00000558917 509 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC7.05□□□□□ -1.28
USP39Q53GS9 CCL2-202ENST00000580907 736 ntTSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC008736.1-201ENST00000592431 568 ntTSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC064807.4-201ENST00000607201 407 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 RPSAP68-201ENST00000625020 438 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 RACK1-235ENST00000626067 564 ntTSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 TSHZ2-205ENST00000626626 670 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 MTND2P41-201ENST00000637599 773 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC7.05□□□□□ -1.28
USP39Q53GS9 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 AL671511.1-201ENST00000425033 3458 ntTSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 SPATA31C1-201ENST00000420021 3895 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 CLCN5-201ENST00000307367 3177 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC7.05□□□□□ -1.28
USP39Q53GS9 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC7.05□□□□□ -1.28
USP39Q53GS9 AC009237.3-203ENST00000442128 3551 ntBASIC7.05□□□□□ -1.28
USP39Q53GS9 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC7.05□□□□□ -1.28
USP39Q53GS9 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
USP39Q53GS9 ACKR2-201ENST00000422265 2956 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms