Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC090358.1-201ENST00000579862 852 ntTSL 3 BASIC7.67□□□□□ -1.18
MSX1P28360 AC015911.3-201ENST00000592908 849 ntTSL 5 BASIC7.67□□□□□ -1.18
MSX1P28360 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC7.67□□□□□ -1.18
MSX1P28360 AC010385.2-201ENST00000603743 490 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AL121655.1-201ENST00000605811 308 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AL135999.3-201ENST00000610501 812 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AC239803.3-201ENST00000614663 494 ntTSL 3 BASIC7.67□□□□□ -1.18
MSX1P28360 AC011472.4-201ENST00000615848 491 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AC002553.4-201ENST00000616896 331 ntBASIC7.67□□□□□ -1.18
MSX1P28360 AC073569.3-201ENST00000619055 682 ntBASIC7.67□□□□□ -1.18
MSX1P28360 Metazoa_SRP.115-201ENST00000619303 284 ntBASIC7.67□□□□□ -1.18
MSX1P28360 KRTAP7-1-201ENST00000621162 721 ntAPPRIS P1 BASIC7.67□□□□□ -1.18
MSX1P28360 AC019278.1-201ENST00000623516 479 ntBASIC7.67□□□□□ -1.18
MSX1P28360 MAGOHB-211ENST00000625272 319 ntTSL 3 BASIC7.67□□□□□ -1.18
MSX1P28360 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 SAXO1-203ENST00000542071 1923 ntAPPRIS ALT2 TSL 3 BASIC7.67□□□□□ -1.18
MSX1P28360 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 ZNF512-208ENST00000556601 3543 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 SEC23IP-201ENST00000369075 7168 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 MYO1A-201ENST00000300119 3621 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 AP002001.2-201ENST00000529025 1469 ntBASIC7.67□□□□□ -1.18
MSX1P28360 ATXN3-203ENST00000393287 6770 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 SIDT2-219ENST00000620360 3924 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
MSX1P28360 ZNF383-208ENST00000590503 1673 ntAPPRIS P1 TSL 5 BASIC7.67□□□□□ -1.18
MSX1P28360 C9orf131-201ENST00000312292 3409 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 IMMT-201ENST00000254636 2613 ntTSL 5 BASIC7.66□□□□□ -1.18
MSX1P28360 SCNN1G-201ENST00000300061 3507 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 AP005901.5-201ENST00000545779 1796 ntBASIC7.66□□□□□ -1.18
MSX1P28360 ZNF169-203ENST00000480716 2716 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 NXPE3-207ENST00000616286 1832 ntTSL 5 BASIC7.66□□□□□ -1.18
MSX1P28360 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
MSX1P28360 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 SELENON-205ENST00000630065 2994 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 LCLAT1-201ENST00000309052 5060 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 COPG1-201ENST00000314797 3078 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 LRRC49-203ENST00000443425 3085 ntTSL 2 BASIC7.66□□□□□ -1.18
MSX1P28360 THBS3-201ENST00000368378 3145 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 MOBP-201ENST00000311042 3388 ntAPPRIS ALT2 TSL 2 BASIC7.66□□□□□ -1.18
MSX1P28360 TMEM144-201ENST00000296529 3442 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC7.66□□□□□ -1.18
MSX1P28360 MYH2-204ENST00000532183 2528 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
MSX1P28360 OR9G4-201ENST00000302957 984 ntBASIC7.66□□□□□ -1.18
MSX1P28360 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
MSX1P28360 Y_RNA.9-201ENST00000362354 101 ntBASIC7.66□□□□□ -1.18
MSX1P28360 Y_RNA.18-201ENST00000362461 102 ntBASIC7.66□□□□□ -1.18
MSX1P28360 Y_RNA.162-201ENST00000363683 102 ntBASIC7.66□□□□□ -1.18
MSX1P28360 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC7.66□□□□□ -1.18
MSX1P28360 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
MSX1P28360 Y_RNA.453-201ENST00000384223 109 ntBASIC7.66□□□□□ -1.18
MSX1P28360 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC7.66□□□□□ -1.18
MSX1P28360 NCSTNP1-201ENST00000406229 144 ntBASIC7.66□□□□□ -1.18
MSX1P28360 RN7SKP127-201ENST00000410443 354 ntBASIC7.66□□□□□ -1.18
MSX1P28360 TPT1P2-201ENST00000413105 503 ntBASIC7.66□□□□□ -1.18
MSX1P28360 AL160290.1-201ENST00000415509 416 ntTSL 3 BASIC7.66□□□□□ -1.18
MSX1P28360 OR4A8-201ENST00000418689 945 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
MSX1P28360 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC7.66□□□□□ -1.18
MSX1P28360 AC233728.2-201ENST00000425348 757 ntBASIC7.66□□□□□ -1.18
MSX1P28360 AC019055.1-201ENST00000432822 443 ntTSL 3 BASIC7.66□□□□□ -1.18
MSX1P28360 MTND1P28-201ENST00000435623 950 ntBASIC7.66□□□□□ -1.18
MSX1P28360 TMX2P1-201ENST00000436507 708 ntBASIC7.66□□□□□ -1.18
MSX1P28360 AC244102.1-201ENST00000437309 848 ntTSL 3 BASIC7.66□□□□□ -1.18
MSX1P28360 RAB9AP5-201ENST00000437794 597 ntBASIC7.66□□□□□ -1.18
MSX1P28360 AC105942.1-202ENST00000438509 952 ntTSL 3 BASIC7.66□□□□□ -1.18
MSX1P28360 AC007790.1-201ENST00000439081 782 ntBASIC7.66□□□□□ -1.18
MSX1P28360 TBL1YP1-201ENST00000440297 1026 ntBASIC7.66□□□□□ -1.18
MSX1P28360 AC010099.2-201ENST00000443177 373 ntBASIC7.66□□□□□ -1.18
MSX1P28360 RAB9AP2-201ENST00000443911 597 ntBASIC7.66□□□□□ -1.18
MSX1P28360 GDI2P2-201ENST00000445131 608 ntBASIC7.66□□□□□ -1.18
MSX1P28360 FAR2P1-206ENST00000449736 709 ntBASIC7.66□□□□□ -1.18
MSX1P28360 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
MSX1P28360 UBTFL6-201ENST00000477929 1024 ntBASIC7.66□□□□□ -1.18
MSX1P28360 MTND6P6-201ENST00000478031 263 ntBASIC7.66□□□□□ -1.18
MSX1P28360 RN7SL792P-201ENST00000496286 305 ntBASIC7.66□□□□□ -1.18
MSX1P28360 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC7.66□□□□□ -1.18
MSX1P28360 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC7.66□□□□□ -1.18
MSX1P28360 LINC02517-201ENST00000509453 492 ntTSL 2 BASIC7.66□□□□□ -1.18
MSX1P28360 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC7.66□□□□□ -1.18
MSX1P28360 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC7.66□□□□□ -1.18
MSX1P28360 SETP21-201ENST00000514799 892 ntBASIC7.66□□□□□ -1.18
MSX1P28360 AC096661.1-201ENST00000515870 822 ntBASIC7.66□□□□□ -1.18
MSX1P28360 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC7.66□□□□□ -1.18
MSX1P28360 OXR1-212ENST00000521592 993 ntTSL 5 BASIC7.66□□□□□ -1.18
MSX1P28360 CHCHD7-215ENST00000523061 557 ntTSL 3 BASIC7.66□□□□□ -1.18
MSX1P28360 IGLV7-35-201ENST00000523314 340 ntBASIC7.66□□□□□ -1.18
MSX1P28360 AP000662.1-201ENST00000530952 487 ntBASIC7.66□□□□□ -1.18
MSX1P28360 OR4C9P-201ENST00000532368 925 ntBASIC7.66□□□□□ -1.18
MSX1P28360 AC073913.2-201ENST00000541512 145 ntBASIC7.66□□□□□ -1.18
MSX1P28360 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC7.66□□□□□ -1.18
MSX1P28360 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC7.66□□□□□ -1.18
MSX1P28360 AC087499.3-201ENST00000578210 717 ntTSL 2 BASIC7.66□□□□□ -1.18
MSX1P28360 MIR3671-201ENST00000580455 88 ntBASIC7.66□□□□□ -1.18
MSX1P28360 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC7.66□□□□□ -1.18
MSX1P28360 AC113554.1-201ENST00000606284 490 ntBASIC7.66□□□□□ -1.18
MSX1P28360 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC7.66□□□□□ -1.18
MSX1P28360 AL117372.1-201ENST00000613711 459 ntTSL 4 BASIC7.66□□□□□ -1.18
MSX1P28360 Metazoa_SRP.39-201ENST00000614194 271 ntBASIC7.66□□□□□ -1.18
MSX1P28360 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC7.66□□□□□ -1.18
MSX1P28360 AL356095.2-201ENST00000624025 457 ntBASIC7.66□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms