Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
HMGB1P09429 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
HMGB1P09429 CDC7-203ENST00000428239 3313 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
HMGB1P09429 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC8.22□□□□□ -1.09
HMGB1P09429 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
HMGB1P09429 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC8.22□□□□□ -1.09
HMGB1P09429 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
HMGB1P09429 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC8.22□□□□□ -1.09
HMGB1P09429 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
HMGB1P09429 AP005432.1-201ENST00000580891 3485 ntBASIC8.22□□□□□ -1.09
HMGB1P09429 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.09
HMGB1P09429 AC004014.2-201ENST00000623718 5122 ntBASIC8.21□□□□□ -1.09
HMGB1P09429 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC8.21□□□□□ -1.09
HMGB1P09429 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC8.21□□□□□ -1.09
HMGB1P09429 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC8.21□□□□□ -1.09
HMGB1P09429 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC8.21□□□□□ -1.09
HMGB1P09429 AC015969.1-201ENST00000366218 1416 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
HMGB1P09429 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC8.21□□□□□ -1.09
HMGB1P09429 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC8.21□□□□□ -1.09
HMGB1P09429 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC8.21□□□□□ -1.1
HMGB1P09429 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC8.21□□□□□ -1.1
HMGB1P09429 AC102941.1-201ENST00000567616 1537 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 AL080312.1-201ENST00000256654 824 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 HESX1-201ENST00000295934 981 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
HMGB1P09429 RNA5SP514-201ENST00000363717 111 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 RNA5SP279-201ENST00000365513 117 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC8.21□□□□□ -1.1
HMGB1P09429 MIR301B-201ENST00000390813 78 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC8.21□□□□□ -1.1
HMGB1P09429 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC8.21□□□□□ -1.1
HMGB1P09429 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC8.21□□□□□ -1.1
HMGB1P09429 LINC01687-203ENST00000420255 897 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
HMGB1P09429 AC017019.1-201ENST00000426129 261 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 AL445528.1-201ENST00000426330 420 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 TRIM60P13-201ENST00000432350 1283 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 MTCYBP29-201ENST00000436327 1006 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 MYL6P3-201ENST00000436904 432 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 PA2G4P6-201ENST00000438325 1197 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC8.21□□□□□ -1.1
HMGB1P09429 AC013727.1-202ENST00000455716 580 ntTSL 4 BASIC8.21□□□□□ -1.1
HMGB1P09429 AL133244.1-201ENST00000456007 258 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 MTND6P8-201ENST00000503471 522 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC8.21□□□□□ -1.1
HMGB1P09429 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
HMGB1P09429 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC8.21□□□□□ -1.1
HMGB1P09429 SNORA81.2-201ENST00000516868 170 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 RN7SKP11-201ENST00000517018 287 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 AC079089.1-203ENST00000533300 431 ntTSL 5 BASIC8.21□□□□□ -1.1
HMGB1P09429 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC8.21□□□□□ -1.1
HMGB1P09429 AC007537.1-201ENST00000539347 327 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 NXPE2P1-201ENST00000543705 726 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC8.21□□□□□ -1.1
HMGB1P09429 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC8.21□□□□□ -1.1
HMGB1P09429 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC8.21□□□□□ -1.1
HMGB1P09429 AC110603.1-201ENST00000580645 468 ntTSL 3 BASIC8.21□□□□□ -1.1
HMGB1P09429 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC8.21□□□□□ -1.1
HMGB1P09429 SIGLEC31P-201ENST00000594237 551 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 AL121782.1-201ENST00000611242 413 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 AC131009.3-201ENST00000621809 287 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
HMGB1P09429 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC8.21□□□□□ -1.1
HMGB1P09429 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC8.21□□□□□ -1.1
HMGB1P09429 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
HMGB1P09429 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC8.21□□□□□ -1.1
HMGB1P09429 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
HMGB1P09429 TUBBP10-201ENST00000427668 1301 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC8.21□□□□□ -1.1
HMGB1P09429 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
HMGB1P09429 ASNSP6-201ENST00000592770 1618 ntBASIC8.21□□□□□ -1.1
HMGB1P09429 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC8.21□□□□□ -1.1
HMGB1P09429 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC8.21□□□□□ -1.1
HMGB1P09429 AC104958.1-201ENST00000509350 1973 ntTSL 2 BASIC8.21□□□□□ -1.1
HMGB1P09429 CR1-204ENST00000367052 7469 ntTSL 5 BASIC8.2□□□□□ -1.1
HMGB1P09429 CR1-205ENST00000367053 7469 ntTSL 5 BASIC8.2□□□□□ -1.1
HMGB1P09429 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC8.2□□□□□ -1.1
HMGB1P09429 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
HMGB1P09429 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 TMED10-201ENST00000303575 4127 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
HMGB1P09429 OR5AU1-201ENST00000304418 1199 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
HMGB1P09429 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
HMGB1P09429 MIR541-201ENST00000401360 84 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 AP001043.1-203ENST00000415824 407 ntTSL 5 BASIC8.2□□□□□ -1.1
HMGB1P09429 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC8.2□□□□□ -1.1
HMGB1P09429 SNRPEP5-201ENST00000425442 278 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 AC010978.1-202ENST00000427050 893 ntTSL 3 BASIC8.2□□□□□ -1.1
HMGB1P09429 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC8.2□□□□□ -1.1
HMGB1P09429 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC8.2□□□□□ -1.1
HMGB1P09429 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 AL353803.3-201ENST00000444641 335 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 BZW1P1-201ENST00000454901 1240 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 RPL5P13-201ENST00000462840 709 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 OR10J9P-201ENST00000511932 987 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HMGB1P09429 AC106800.2-201ENST00000514009 1103 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 RNU6-362P-201ENST00000516736 90 ntBASIC8.2□□□□□ -1.1
HMGB1P09429 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC8.2□□□□□ -1.1
HMGB1P09429 RN7SL42P-201ENST00000579786 294 ntBASIC8.2□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms