Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.92□□□□□ -1.3
APOEP02649 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.92□□□□□ -1.3
APOEP02649 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
APOEP02649 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
APOEP02649 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
APOEP02649 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC6.92□□□□□ -1.3
APOEP02649 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
APOEP02649 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
APOEP02649 AC022905.1-201ENST00000503430 3048 ntBASIC6.91□□□□□ -1.3
APOEP02649 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
APOEP02649 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.91□□□□□ -1.3
APOEP02649 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.91□□□□□ -1.3
APOEP02649 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
APOEP02649 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
APOEP02649 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
APOEP02649 MTCO1P25-201ENST00000414449 1799 ntBASIC6.91□□□□□ -1.3
APOEP02649 RNA5SP140-201ENST00000364524 92 ntBASIC6.91□□□□□ -1.3
APOEP02649 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
APOEP02649 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
APOEP02649 AL929472.1-201ENST00000417484 429 ntBASIC6.91□□□□□ -1.3
APOEP02649 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC6.91□□□□□ -1.3
APOEP02649 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC6.91□□□□□ -1.3
APOEP02649 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC6.91□□□□□ -1.3
APOEP02649 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC6.91□□□□□ -1.3
APOEP02649 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC6.91□□□□□ -1.3
APOEP02649 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC6.91□□□□□ -1.3
APOEP02649 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC6.91□□□□□ -1.3
APOEP02649 PVT1-214ENST00000522875 922 ntTSL 5 BASIC6.91□□□□□ -1.3
APOEP02649 RPL27A-211ENST00000532359 406 ntTSL 2 BASIC6.91□□□□□ -1.3
APOEP02649 OR9G2P-201ENST00000533326 880 ntBASIC6.91□□□□□ -1.3
APOEP02649 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC6.91□□□□□ -1.3
APOEP02649 AC063926.1-201ENST00000539532 415 ntTSL 2 BASIC6.91□□□□□ -1.3
APOEP02649 AC092376.1-201ENST00000569677 335 ntTSL 2 BASIC6.91□□□□□ -1.3
APOEP02649 RN7SL371P-201ENST00000578099 267 ntBASIC6.91□□□□□ -1.3
APOEP02649 AL359704.2-201ENST00000604335 521 ntBASIC6.91□□□□□ -1.3
APOEP02649 AC093635.1-201ENST00000609028 555 ntBASIC6.91□□□□□ -1.3
APOEP02649 AC004241.2-201ENST00000614562 444 ntBASIC6.91□□□□□ -1.3
APOEP02649 AC092683.1-202ENST00000620023 754 ntTSL 3 BASIC6.91□□□□□ -1.3
APOEP02649 AC159540.2-201ENST00000621110 754 ntTSL 3 BASIC6.91□□□□□ -1.3
APOEP02649 AC068213.1-201ENST00000625124 226 ntBASIC6.91□□□□□ -1.3
APOEP02649 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC6.91□□□□□ -1.3
APOEP02649 AC013488.1-201ENST00000526618 1838 ntBASIC6.91□□□□□ -1.3
APOEP02649 TEK-202ENST00000406359 3935 ntTSL 2 BASIC6.91□□□□□ -1.3
APOEP02649 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
APOEP02649 AL591848.4-201ENST00000567832 3472 ntBASIC6.91□□□□□ -1.3
APOEP02649 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
APOEP02649 FANCD2P2-201ENST00000437591 1400 ntBASIC6.91□□□□□ -1.3
APOEP02649 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC6.91□□□□□ -1.3
APOEP02649 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
APOEP02649 AC009120.2-204ENST00000621548 2032 ntBASIC6.91□□□□□ -1.3
APOEP02649 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.91□□□□□ -1.3
APOEP02649 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
APOEP02649 LINC01579-207ENST00000557481 3480 ntTSL 5 BASIC6.91□□□□□ -1.3
APOEP02649 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.9□□□□□ -1.3
APOEP02649 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC6.9□□□□□ -1.3
APOEP02649 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
APOEP02649 OR7A10-202ENST00000641129 1847 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
APOEP02649 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
APOEP02649 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
APOEP02649 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
APOEP02649 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
APOEP02649 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
APOEP02649 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
APOEP02649 OR2M1P-201ENST00000318104 951 ntBASIC6.9□□□□□ -1.3
APOEP02649 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
APOEP02649 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
APOEP02649 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
APOEP02649 VTRNA3-1P-201ENST00000362552 102 ntBASIC6.9□□□□□ -1.3
APOEP02649 AL034417.1-201ENST00000399343 800 ntBASIC6.9□□□□□ -1.3
APOEP02649 AL033519.1-201ENST00000407266 307 ntBASIC6.9□□□□□ -1.3
APOEP02649 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC6.9□□□□□ -1.3
APOEP02649 RANP6-201ENST00000413691 644 ntBASIC6.9□□□□□ -1.3
APOEP02649 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC6.9□□□□□ -1.3
APOEP02649 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC6.9□□□□□ -1.3
APOEP02649 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC6.9□□□□□ -1.3
APOEP02649 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.9□□□□□ -1.3
APOEP02649 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC6.9□□□□□ -1.3
APOEP02649 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6.9□□□□□ -1.3
APOEP02649 AL031681.1-201ENST00000443304 400 ntBASIC6.9□□□□□ -1.3
APOEP02649 AL512785.1-201ENST00000447899 517 ntTSL 3 BASIC6.9□□□□□ -1.3
APOEP02649 AL451063.1-201ENST00000450164 1133 ntBASIC6.9□□□□□ -1.3
APOEP02649 AC073476.1-201ENST00000452854 407 ntBASIC6.9□□□□□ -1.3
APOEP02649 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC6.9□□□□□ -1.3
APOEP02649 RN7SL393P-201ENST00000463588 296 ntBASIC6.9□□□□□ -1.3
APOEP02649 RN7SL612P-201ENST00000497704 295 ntBASIC6.9□□□□□ -1.3
APOEP02649 RAB30-209ENST00000532548 644 ntTSL 3 BASIC6.9□□□□□ -1.3
APOEP02649 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC6.9□□□□□ -1.3
APOEP02649 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC6.9□□□□□ -1.3
APOEP02649 AC020978.2-201ENST00000563203 428 ntTSL 3 BASIC6.9□□□□□ -1.3
APOEP02649 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC6.9□□□□□ -1.3
APOEP02649 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.9□□□□□ -1.3
APOEP02649 ZNF790-AS1-201ENST00000587278 653 ntTSL 5 BASIC6.9□□□□□ -1.3
APOEP02649 RPL29P33-201ENST00000587474 316 ntBASIC6.9□□□□□ -1.3
APOEP02649 AC012358.3-204ENST00000599475 978 ntTSL 3 BASIC6.9□□□□□ -1.3
APOEP02649 AL049840.5-201ENST00000602827 552 ntBASIC6.9□□□□□ -1.3
APOEP02649 AL352984.2-201ENST00000611153 546 ntBASIC6.9□□□□□ -1.3
APOEP02649 MIR6885-201ENST00000612241 66 ntBASIC6.9□□□□□ -1.3
APOEP02649 SOX9-AS1-218ENST00000628742 733 ntTSL 5 BASIC6.9□□□□□ -1.3
APOEP02649 AC011346.1-204ENST00000638089 1210 ntAPPRIS P5 TSL 3 BASIC6.9□□□□□ -1.3
APOEP02649 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC6.9□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms