Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LINC00477Q96M19 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC14.86□□□□□ -0.03
LINC00477Q96M19 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC14.86□□□□□ -0.03
LINC00477Q96M19 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 PTBP1P-201ENST00000554374 1601 ntBASIC14.85□□□□□ -0.03
LINC00477Q96M19 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
LINC00477Q96M19 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
LINC00477Q96M19 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 HSCB-202ENST00000398941 955 ntTSL 2 BASIC14.85□□□□□ -0.03
LINC00477Q96M19 BET1L-204ENST00000410108 637 ntTSL 3 BASIC14.85□□□□□ -0.03
LINC00477Q96M19 GXYLT1P2-201ENST00000433312 1230 ntBASIC14.85□□□□□ -0.03
LINC00477Q96M19 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC14.85□□□□□ -0.03
LINC00477Q96M19 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 PLD4-205ENST00000553861 667 ntTSL 2 BASIC14.85□□□□□ -0.03
LINC00477Q96M19 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
LINC00477Q96M19 AC008694.1-202ENST00000636953 945 ntBASIC14.85□□□□□ -0.03
LINC00477Q96M19 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC14.85□□□□□ -0.03
LINC00477Q96M19 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC14.85□□□□□ -0.03
LINC00477Q96M19 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 AP001271.2-201ENST00000624018 1556 ntBASIC14.85□□□□□ -0.03
LINC00477Q96M19 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 GCK-205ENST00000437084 1385 ntTSL 5 BASIC14.85□□□□□ -0.03
LINC00477Q96M19 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LINC00477Q96M19 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00477Q96M19 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00477Q96M19 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00477Q96M19 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00477Q96M19 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00477Q96M19 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00477Q96M19 TREX1-205ENST00000625293 1783 ntBASIC14.84□□□□□ -0.03
LINC00477Q96M19 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00477Q96M19 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00477Q96M19 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 PLLP-204ENST00000569059 665 ntTSL 3 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00477Q96M19 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LINC00477Q96M19 AC069236.1-201ENST00000604339 616 ntBASIC14.84□□□□□ -0.03
LINC00477Q96M19 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC14.84□□□□□ -0.03
LINC00477Q96M19 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LINC00477Q96M19 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.03
LINC00477Q96M19 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC14.83□□□□□ -0.03
LINC00477Q96M19 POLI-202ENST00000406285 2030 ntTSL 2 BASIC14.83□□□□□ -0.03
LINC00477Q96M19 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.03
LINC00477Q96M19 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC14.83□□□□□ -0.03
LINC00477Q96M19 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LINC00477Q96M19 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
LINC00477Q96M19 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC14.83□□□□□ -0.04
LINC00477Q96M19 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00477Q96M19 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00477Q96M19 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00477Q96M19 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00477Q96M19 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC14.83□□□□□ -0.04
LINC00477Q96M19 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC14.83□□□□□ -0.04
LINC00477Q96M19 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00477Q96M19 BRWD1-AS2-201ENST00000603064 1028 ntBASIC14.83□□□□□ -0.04
LINC00477Q96M19 AC105020.6-201ENST00000621523 1217 ntBASIC14.83□□□□□ -0.04
LINC00477Q96M19 WWOX-218ENST00000627394 894 ntTSL 5 BASIC14.83□□□□□ -0.04
LINC00477Q96M19 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00477Q96M19 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC14.83□□□□□ -0.04
LINC00477Q96M19 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00477Q96M19 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC14.83□□□□□ -0.04
LINC00477Q96M19 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00477Q96M19 AC068338.2-201ENST00000563278 1430 ntBASIC14.83□□□□□ -0.04
LINC00477Q96M19 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00477Q96M19 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC14.83□□□□□ -0.04
LINC00477Q96M19 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
LINC00477Q96M19 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
LINC00477Q96M19 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC14.82□□□□□ -0.04
LINC00477Q96M19 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC14.82□□□□□ -0.04
LINC00477Q96M19 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LINC00477Q96M19 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms