Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 AIRN-201ENST00000601203 4374 ntBASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 HLA-L-209ENST00000420110 1011 ntBASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 MYC-209ENST00000641252 345 ntBASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 TMEM179-206ENST00000616017 1645 ntBASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC116Q8IYX3 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC116Q8IYX3 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 AL390719.1-204ENST00000412397 1219 ntBASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 AC133041.1-202ENST00000642053 222 ntBASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 AC125437.2-201ENST00000625180 2167 ntBASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC116Q8IYX3 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 AC073210.2-201ENST00000430369 194 ntBASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 AC069152.1-201ENST00000438030 544 ntBASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 AC142086.2-201ENST00000569753 217 ntBASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 AC005829.2-201ENST00000571422 1056 ntBASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC116Q8IYX3 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC116Q8IYX3 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC116Q8IYX3 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC116Q8IYX3 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC116Q8IYX3 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC116Q8IYX3 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC116Q8IYX3 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC116Q8IYX3 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC116Q8IYX3 AL355802.2-201ENST00000402069 882 ntBASIC18.66■□□□□ 0.58
CCDC116Q8IYX3 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC116Q8IYX3 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC116Q8IYX3 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.66■□□□□ 0.58
CCDC116Q8IYX3 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms