Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 MFF-205ENST00000354503 1085 ntTSL 2 BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 HLA-G-202ENST00000376815 851 ntBASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 HLA-G-203ENST00000376818 1127 ntBASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCHD3Q3KNS1 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 KRT16P6-202ENST00000425692 1426 ntBASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 AP003097.1-201ENST00000530657 1135 ntBASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 AC060766.5-201ENST00000590539 871 ntBASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PTCHD3Q3KNS1 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 AC026366.1-201ENST00000488803 879 ntBASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 HLA-B-256ENST00000639848 1089 ntBASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PTCHD3Q3KNS1 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 AC128676.1-201ENST00000454392 318 ntBASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 AC092368.3-202ENST00000574180 1591 ntBASIC19.36■□□□□ 0.69
PTCHD3Q3KNS1 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.35■□□□□ 0.69
PTCHD3Q3KNS1 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD3Q3KNS1 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD3Q3KNS1 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
PTCHD3Q3KNS1 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.35■□□□□ 0.69
PTCHD3Q3KNS1 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD3Q3KNS1 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD3Q3KNS1 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PTCHD3Q3KNS1 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.35■□□□□ 0.69
PTCHD3Q3KNS1 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms