Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC12.39□□□□□ -0.43
HSPG2P98160 HOTTIP_1.1-201ENST00000620415 57 ntBASIC12.39□□□□□ -0.43
HSPG2P98160 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HSPG2P98160 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HSPG2P98160 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC12.39□□□□□ -0.43
HSPG2P98160 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC12.39□□□□□ -0.43
HSPG2P98160 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
HSPG2P98160 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC12.39□□□□□ -0.43
HSPG2P98160 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HSPG2P98160 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC12.39□□□□□ -0.43
HSPG2P98160 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
HSPG2P98160 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC12.39□□□□□ -0.43
HSPG2P98160 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HSPG2P98160 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC12.38□□□□□ -0.43
HSPG2P98160 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC12.38□□□□□ -0.43
HSPG2P98160 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HSPG2P98160 AL023973.1-201ENST00000624619 620 ntBASIC12.38□□□□□ -0.43
HSPG2P98160 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HSPG2P98160 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HSPG2P98160 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HSPG2P98160 RNA5SP419-201ENST00000515908 135 ntBASIC12.38□□□□□ -0.43
HSPG2P98160 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC12.38□□□□□ -0.43
HSPG2P98160 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC12.38□□□□□ -0.43
HSPG2P98160 IFNL4P1-201ENST00000607083 540 ntBASIC12.38□□□□□ -0.43
HSPG2P98160 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC12.38□□□□□ -0.43
HSPG2P98160 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HSPG2P98160 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
HSPG2P98160 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
HSPG2P98160 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
HSPG2P98160 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC12.38□□□□□ -0.43
HSPG2P98160 GCSHP2-201ENST00000560971 527 ntBASIC12.38□□□□□ -0.43
HSPG2P98160 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
HSPG2P98160 AC106795.1-205ENST00000512851 1056 ntBASIC12.37□□□□□ -0.43
HSPG2P98160 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC12.37□□□□□ -0.43
HSPG2P98160 FAM99A-202ENST00000538190 1989 ntBASIC12.37□□□□□ -0.43
HSPG2P98160 PTBP1P-201ENST00000554374 1601 ntBASIC12.37□□□□□ -0.43
HSPG2P98160 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC12.37□□□□□ -0.43
HSPG2P98160 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HSPG2P98160 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
HSPG2P98160 TSPY12P-201ENST00000421279 868 ntBASIC12.37□□□□□ -0.43
HSPG2P98160 AC141257.4-201ENST00000634557 245 ntBASIC12.37□□□□□ -0.43
HSPG2P98160 AC136944.6-201ENST00000634818 245 ntBASIC12.37□□□□□ -0.43
HSPG2P98160 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC12.37□□□□□ -0.43
HSPG2P98160 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HSPG2P98160 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HSPG2P98160 ANKRD20A18P-201ENST00000359341 492 ntBASIC12.37□□□□□ -0.43
HSPG2P98160 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC12.37□□□□□ -0.43
HSPG2P98160 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC12.37□□□□□ -0.43
HSPG2P98160 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC12.37□□□□□ -0.43
HSPG2P98160 PRELID1P1-202ENST00000567272 903 ntBASIC12.37□□□□□ -0.43
HSPG2P98160 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC12.37□□□□□ -0.43
HSPG2P98160 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC12.37□□□□□ -0.43
HSPG2P98160 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC12.37□□□□□ -0.43
HSPG2P98160 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
HSPG2P98160 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HSPG2P98160 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC12.37□□□□□ -0.43
HSPG2P98160 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HSPG2P98160 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
HSPG2P98160 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
HSPG2P98160 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
HSPG2P98160 MIR3652-201ENST00000579335 131 ntBASIC12.37□□□□□ -0.43
HSPG2P98160 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
HSPG2P98160 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC12.36□□□□□ -0.43
HSPG2P98160 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC12.36□□□□□ -0.43
HSPG2P98160 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC12.36□□□□□ -0.43
HSPG2P98160 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC12.36□□□□□ -0.43
HSPG2P98160 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
HSPG2P98160 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
HSPG2P98160 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 STK25-204ENST00000405585 1643 ntTSL 2 BASIC12.36□□□□□ -0.43
HSPG2P98160 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC12.36□□□□□ -0.43
HSPG2P98160 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC12.36□□□□□ -0.43
HSPG2P98160 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC12.36□□□□□ -0.43
HSPG2P98160 TBCB-205ENST00000585746 875 ntTSL 3 BASIC12.36□□□□□ -0.43
HSPG2P98160 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
HSPG2P98160 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC12.36□□□□□ -0.43
HSPG2P98160 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC12.36□□□□□ -0.43
HSPG2P98160 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
HSPG2P98160 Z85996.1-201ENST00000494644 937 ntBASIC12.35□□□□□ -0.43
HSPG2P98160 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC12.35□□□□□ -0.43
HSPG2P98160 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
HSPG2P98160 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
HSPG2P98160 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms